Anne Stone's full CV
Journal Articles
Verrelli BC, Stone AC, and Lewis CM. (2008) Different Selective Pressures Shape the Molecular Evolution of Color Vision in Human and Chimpanzee Populations. Molecular Biology and Evolution 25:2735-2743.
Perry GH, Yang F, Marques-Bonet T, Murphy C, Fitzgerald T, Lee AS, Hyland C, Smith RS, Stone AC, Hurles ME, Tyler-Smith C, Eichler EE, Carter NP, Lee C, and Redon R. (2008) Copy number variation and genome evolution in humans and chimpanzees. Genome Research 18:1698-1710.
Perry GH, Dominy NJ, Claw KG, Lee AS, Werner J, Villanea FA, Mountain JL, Misra R, Lee C, and Stone AC. Diet and the evolution of amylase gene copy number variation among human populations. Nature Genetics (2007) 39:1256-1260.
Lewis CM, Buikstra JE, and Stone AC. Ancient DNA and genetic continuity in the south central Andes. Latin American Antiquity (2007) 18:145-160.
Lewis CM, Lizarraga B, Tito RY, Lopez P, Iannacone GC, Medina AC, Marinez RE, Polo SI, de la Cruz F, Cáceres AM, and Stone AC. Mitochondrial DNA and the peopling of South America. Human Biology (2007) 79:159-178.
Benn Torres J, Kittles R, and Stone AC. Mitochondrial and Y chromosome diversity in the English-speaking Caribbean. Annals of Human Genetics (2007) 71:782-90
Parker-Katiraee L, Carson AR, Yamada, T, Arnaud P, Feil R, Abu-Amero SN, Moore GE, Kaneda M, Perry GH, Stone AC, Lee C, Meguro-Horike M, Sasaki H, Kobayashi K, Scherer SW. Identification of the imprinted KLF14 transcription factor undergoing human-specific accelerated evolution. PLOS Genetics, (2007) May 4;3(5):e65
Becquet C, Patterson N, Stone A, Przeworski M, and Reich D. Elucidating the population structure of chimpanzees. PLOS Genetics, (2007) Apr 20;3(4):e66.
Clark VJ, Ptak SE, Tiemann I, Qian Y, Coop G, Stone AC, Przeworski M, Arnheim M, and Di Rienzo A, Combining sperm typing and LD analyses reveals differences in selective pressures or recombination rates across human populations. Genetics (2007) 175:795-804
Wilbur AK, Kubatko LS, Feurstein JR, Hurtado AM, Hill KR, and Stone AC. Vitamin D receptor gene polymorphisms and susceptibility M. tuberculosis in Native Paraguayans. Tuberculosis (2007) 87:329-337
Stone AC and Verrelli BC. Focusing on comparative ape population genetics in the post-genomic age. Current Opinion in Genetics and Development. (2006) 16:586-591
Verrelli BC, Tishkoff SA, Stone AC and Touchman JW. Contrasting histories of G6PD molecular evolution and malarial resistance in humans and chimpanzees.Molecular Biology and Evolution. (2006) 23:1592-1601.
Perry GH, Tchinda J, McGrath SD, Zhang J, Picker SR, Cáceres AM, Iafrate AJ, Scherer SW, Eichler EE, Lee C, and Stone AC. Hotspots for copy number variation in chimpanzees and humans. Proceedings of the National Academy of Sciences, USA (2006) 103:8006-8011.
Wooding S, Bufe B, Grassi C, Howard MT, Stone AC, Vazquez M, Dunn DM, Meyerhof
W, Weiss RK, and Bamshad MJ, (2006) Convergent evolution of bitter taste
sensitivity in humans and chimpanzees. Nature 440:930-934.
Perry
GH, Verrelli B, and Stone AC,
(2006) Molecular evolution of the primate developmental genes MSX1 and
PAX9. Molecular Biology and Evolution. Molecular Biology and Evolution
23:644-654.
Lewis CM, Tito R, Lizarraga B, and Stone AC, (2005) Land, Language, and Loci: MtDNA
in Native Americans
and the Genetic History of Perú.
American Journal of Physical Anthropology
127: 351-360.
Perry G, Verrelli B, and Stone AC, (2005) Comparative analyses
reveal a complex history of molecular evolution for human MYH16.
Molecular Biology and
Evolution
22:379-382.
Wooding
S, Stone AC, Dunn DM, Mummidi S, Jorde LB, Weiss RB, Ahuja SK, and Bamshad MJ,
(2005) A selective sweep in
chimpanzee CCR5 and resistance to AIDS.
American Journal of Human Genetics
76:291-301.
Ramenofsky AF, Wilbur AK and Stone AC, (2003) Native American disease history: past, present, future directions. World Archaeology 35:241-257.
Pearson OM and Stone AC, (2003)
On the diffusion-wave model for
the spread of modern humans. Current Anthropology 44:559-561
Hofkin BV, Wright A, Brown J, Miller RD, Rassmann K, Snell
H, Stone AC and Snell H, (2003)
Ancient DNA gives green light to repatriation of Galápagos Iguanas. Conservation Genetics 4:105-108.
Monsalve MC, Stone AC, Lewis CM, Rempel A, Richards M,
Straathof D, and Devine DV, (2002) Molecular analysis of 550 year old human remains
found in a glacier in Canada. American Journal of Physical Anthropology.
119:288-291
Bamshad M, Mummidi S, Gonzalez E, Ahuja SS, Dunn DM, Stone
AC, Jorde LB, Ahuja SK, Weiss RB,
(2002)
Evidence of balancing selection in the 5’ cis-regulatory
region of CCR5. Proceedings of the National Academy of Sciences, USA
99:10539-10544
(supplementary data)
Stone AC, Griffiths RC, Zegura SL and Hammer M,
(2002)
High levels
of Y-chromosome nucleotide diversity in the genus Pan troglodytes.
Proceedings of the National Academy of Sciences, USA 99:43-48.
(supplementary
data)
Stone AC, Starrs JE and Stoneking M, (2001) Mitochondrial DNA analysis of the presumptive remains of Jesse James. Journal of Forensic Sciences 46:173-176.
Stone AC and Stoneking M, (1999) Analysis of ancient DNA from a prehistoric Amerindian cemetery. Philosophical Transactions of the Royal Society, London, series B 354:153-159.
Stone AC and Stoneking M, (1998) MtDNA analysis of a prehistoric Oneota population: implications for the peopling of the New World. American
Journal of Human Genetics 62(5):1153-1170.
Krings M, Stone AC, Schmitz RW, Krainitzki H, Stoneking M
and Pääbo S, (1997) Neandertal DNA sequences and the origin of modern humans. Cell
90(1):19-30.
Stone AC and Stoneking M, (1996) Genetic analyses of an 8000 year-old Native American skeleton. Ancient Biomolecules 1:83-87.
Stone AC, Milner GR, Pääbo S and Stoneking M, (1996) Sex determination of ancient human skeletons using DNA. American Journal of Physical Anthropology 99:231-238.
Handt O, Richards M, Trommsdorf M, Kilger C, Simanainen J, Georgiev O, Bauer K, Stone A, Hedges R, Schaffner W, Utermann G, Sykes B, and Pääbo S, (1994) Molecular genetic analyses of the Tyrolean Ice Man. Science 264:1775-1778.
Stone AC and Stoneking M, (1993) Ancient DNA from a Pre-Columbian Amerindian population. American Journal of Physical Anthropology 92:463-471.
Book Chapters
Stone AC, (2006) Ancient DNA research in North America, In Environment, Origins, and Population. Handbook of North American Indians, Vol. 3, Ubelaker D. ed., Washington D.C.: Smithsonian Institution.
Lewis CM and Stone AC, (2005) MtDNA diversity at the archaeological site of Chen Chen in Perú. In Biomolecular Archaeology: Genetic Approaches to the Past. D. Reed ed. Occasional Paper No. 32, Center for Archaeological Investigations. Carbondale: Southern Illinois University Press. Pp. 47-60.
Monsalve VM, Lewis CM and Stone AC, (2005) DNA analysis of human remains dated circa 500YB found recently in Canada. In Biomolecular Archaeology: Genetic Approaches to the Past. D. Reed ed. Occasional Paper No. 32, Center for Archaeological Investigations. Carbondale: Southern Illinois University Press. Pp. 9-21.
Stone AC, (2003) Extraction and amplification of ancient DNA. In PCR Technology: Current Innovations, 2nd Edition. Thomas Weissensteiner, Hugh Griffin, and Annette Griffin, eds. Boca Raton FL: CRC Press LLC. pp. 1-6.
Stone AC, (2002)The Postdoc Experience – Is There a Light at the End of the Tunnel? In A Guide to Careers in Physical Anthropology. Alan S. Ryan ed. Westport CT: Greenwood Publishing Group, Inc. pp. 109-114.
Stone AC, (2000) Ancient DNA from skeletal remains. In Biological Anthropology of the Human Skeleton, M. A. Katzenberg and S. Saunders, eds., New York: Wiley Liss, Inc. pp. 343-363.
Stone AC, (1999) Reconstructing human societies with ancient molecules. In Who Were the First Americans? Proceedings of the 58th Annual Biology Colloquium, Oregon State University, R. Bonnichsen ed., Corvallis, OR: Center for the Study of the First Americans.