• Introduction to the course (1/22)
  • Transcript of some relavant portions of the Roche Genetics CD-ROM. (1/27 and 1/29)
  • Introduction to microarrays (2/3)
  • Introduction to NCBI and NIH databases; a tutorial (external link) (2/5)
  • Signal networks and AI (2/10)
  • More on microarrays. (2/17)
  • Data Integration. (2/19)
  • Representation and reasoning with signal networks (2/24)
  • Sequence Alignment 1 (3/7)
  • Sequence Alignment 2 (3/12, 3/24) ; Sequence Alignment 3 (3/24) .
  • FASTA and BLAST: Heuristic methods for sequence alignment (some external links) (3/26) ; FASTA and BLAST highlights. (3/26)
  • Multiple Sequence Alignment (4/7)
  • Genome Sequencing (4/9 -- 4/14)

    Slides from a Stanford class (not mine)

  • Sequence verification and sequence finding -- use of Hidden Markov Models 4/16, 4/21, and 4/23
  • Phylogenetic trees. See the external slides in the bottom of the pointers page. (4/23, 4/28, and 4/30)