2009

·       Liang Sun, Jun Liu, Jianhui Chen, and Jieping Ye. Efficient Recovery of Jointly Sparse Vectors. The Twenty-Third Annual Conference on Neural Information Processing Systems (NIPS 2009). PDF

 

·       Shui Huang, Jing Li, Liang Sun, Jun Liu, Teresa Wu, Kewei Chen, Adam Fleisher, Eric Reiman, and Jieping Ye. Learning Brain Connectivity of Alzheimer's Disease from Neuroimaging Data. The Twenty-Third Annual Conference on Neural Information Processing Systems (NIPS 2009). PDF

·       Ji Liu, Przem Musialski, Peter Wonka, and Jieping Ye. Tensor completion for estimating missing values in visual data. The Twelfth IEEE International Conference on Computer Vision (ICCV 2009). PDF  VIDEO

·       Jun Liu, Shuiwang Ji, and Jieping Ye. Multi-task Feature Learning via Efficient L2,1-Norm Minimization. The Twenty-fifth Conference on Uncertainty in Artificial Intelligence (UAI 2009). PDF  CODE

·       Liang Sun, Rinkal Patel, Jun Liu, Kewei Chen, Teresa Wu, Jing Li, Eric Reiman, and Jieping Ye. Mining Brain Region Connectivity for Alzheimer's Disease Study via Sparse Inverse Covariance Estimation. The Fifteenth ACM SIGKDD International Conference On Knowledge Discovery and Data Mining (SIGKDD 2009), pp. 1335-1344. Full Presentation. PDF

·       Bao-Hong Shen, Shuiwang Ji, and Jieping Ye. Mining Discrete Patterns via Binary Matrix Factorization. The Fifteenth ACM SIGKDD International Conference On Knowledge Discovery and Data Mining (SIGKDD 2009), pp. 757-766. Full Presentation. PDF  CODE

·       Jun Liu, Jianhui Chen, and Jieping Ye. Large-Scale Sparse Logistic Regression. The Fifteenth ACM SIGKDD International Conference On Knowledge Discovery and Data Mining (SIGKDD 2009), pp. 547-556. Full Presentation. PDF  CODE

·       Shuiwang Ji, Lei Yuan, Ying-Xin Li, Zhi-Hua Zhou, Sudhir Kumar, and Jieping Ye. Drosophila Gene Expression Pattern Annotation Using Sparse Features and Term-term Interactions. The Fifteenth ACM SIGKDD International Conference On Knowledge Discovery and Data Mining (SIGKDD 2009), pp. 407-416. Short Presentation. PDF  CODE

·       Jianhui Chen, Lei Tang, Jun Liu, and Jieping Ye. A Convex Formulation for Learning Shared Structures from Multiple Tasks. The Twenty-Sixth International Conference on Machine Learning (ICML 2009). PDF

·       Liang Sun, Shuiwang Ji, and Jieping Ye. A Least Squares Formulation for a Class of Generalized Eigenvalue Problems in Machine Learning. The Twenty-Sixth International Conference on Machine Learning (ICML 2009). PDF

·       Shuiwang Ji and Jieping Ye.  An Accelerated Gradient Method for Trace Norm Minimization. The Twenty-Sixth International Conference on Machine Learning (ICML 2009). PDF  CODE

·       Jun Liu and Jieping Ye. Efficient Euclidean Projections in Linear Time. The Twenty-Sixth International Conference on Machine Learning (ICML 2009). PDF  CODE

·       Zenglin Xu, Rong Jin, Jieping Ye, Michael R. Lyu, and Irwin King. Non-Monotonic Feature Selection. The Twenty-Sixth International Conference on Machine Learning (ICML 2009). PDF

·       Liu Yang, Rong Jin, and Jieping Ye. Online Learning by Ellipsoid Method. The Twenty-Sixth International Conference on Machine Learning (ICML 2009). PDF

·       Ying-Xin Li, Shuiwang Ji, Sudhir Kumar, Jieping Ye, and Zhi-Hua Zhou.  Drosophila Gene Expression Pattern Annotation Through Multi-Instance Multi-Label Learning. The Twenty-first International Joint Conference on Artificial Intelligence (IJCAI 2009). PDF

·       Jun Liu, Jianhui Chen, Songcan Chen, and Jieping Ye. Learning the Optimal Neighborhood Kernel for Classification. The Twenty-first International Joint Conference on Artificial Intelligence (IJCAI 2009). PDF

·       Liang Sun, Shuiwang Ji, Shipeng Yu, and Jieping Ye. On the Equivalence Between Canonical Correlation Analysis and Orthonormalized Partial Least Squares. The Twenty-first International Joint Conference on Artificial Intelligence (IJCAI 2009). PDF

·       Zheng Zhao, Liang Sun, Shipeng Yu, Huan Liu, and Jieping Ye. Multiclass Probabilistic Kernel Discriminant Analysis. The Twenty-first International Joint Conference on Artificial Intelligence (IJCAI 2009). PDF

·       Lei Tang, Jianhui Chen, and Jieping Ye. On Multiple Kernel Learning with Multiple Labels. The Twenty-first International Joint Conference on Artificial Intelligence (IJCAI 2009). PDF

·       Shuiwang Ji and Jieping Ye. Linear Dimensionality Reduction for Multi-label Classification. The Twenty-first International Joint Conference on Artificial Intelligence (IJCAI 2009). PDF

·       Ting Kei Pong, Paul Tseng, Shuiwang Ji, and Jieping Ye. Trace Norm Regularization: Reformulations, Algorithms, and Multi-task Learning. Submitted to SIAM Journal on Optimization, June 2009. PDF  CODE

·       Shuiwang Ji, Lei Tang, Shipeng Yu, and Jieping Ye. A Shared-subspace Learning Framework for Multi-label Classification. ACM Transactions on Knowledge Discovery from Data. In press. PDF

·       Shuiwang Ji, Ying-Xin Li, Zhi-Hua Zhou, Sudhir Kumar, and Jieping Ye. A bag-of-words approach for Drosophila gene expression pattern annotation. BMC Bioinformatics, 2009, 10:119. PDF

·       Mingrui Wu and Jieping Ye. A Small Sphere and Large Margin Approach for Novelty Detection Using Training Data with Outliers. IEEE Transactions on Pattern Analysis and Machine Intelligence. In press. PDF

·       Saif Ali, Jieping Ye, Anshuman Razdan, Peter Wonka. Compressed Facade Displacement Mapping. IEEE Transactions on Visualization and Computer Graphics. Vol. 15, No. 2, pp. 262-273, 2009. PDF

 

2008

·       Shuiwang Ji, Liang Sun, Rong Jin, and Jieping Ye. Multi-label Multiple Kernel Learning. The Twenty-Second Annual Conference on Neural Information Processing Systems (NIPS 2008). PDF

·       Jieping Ye et al. Heterogeneous data fusion for Alzheimer's disease study. The Fourteenth ACM SIGKDD International Conference On Knowledge Discovery and Data Mining (SIGKDD 2008), pp. 1025-1033. PDF

·       Shuiwang Ji, Lei Tang, Shipeng Yu, and Jieping Ye. Extracting Shared Subspace for Multi-label Classification. The Fourteenth ACM SIGKDD International Conference On Knowledge Discovery and Data Mining (SIGKDD 2008), pp. 381-389. PDF

·       Liang Sun, Shuiwang Ji, and Jieping Ye. Hypergraph Spectral Learning for Multi-label Classification. The Fourteenth ACM SIGKDD International Conference On Knowledge Discovery and Data Mining (SIGKDD 2008), pp. 668-676. PDF

·       Jianhui Chen, Shuiwang Ji, Betul Ceran, Qi Li, Mingrui Wu, and Jieping Ye. Learning Subspace Kernels for Classification. The Fourteenth ACM SIGKDD International Conference On Knowledge Discovery and Data Mining (SIGKDD 2008), pp. 106-114. PDF

·       Zheng Zhao, Jiangxin Wang, Huan Liu, Jieping Ye, and Yung Chang. Identifying Biologically Relevant Genes via Multiple Heterogeneous Data Sources. The Fourteenth ACM SIGKDD International Conference On Knowledge Discovery and Data Mining (SIGKDD 2008), pp. 839-847. PDF

·       Liang Sun, Shuiwang Ji, and Jieping Ye. A least squares formulation for canonical correlation analysis. The Twenty-Fifth International Conference on Machine Learning (ICML 2008), pp. 1024-1031. PDF

·       Jianhui Chen and Jieping Ye. Training SVM with indefinite kernels. The Twenty-Fifth International Conference on Machine Learning (ICML 2008), pp. 136-143. PDF

·       Shuiwang Ji and Jieping Ye. A Unified Framework for Generalized Linear Discriminant Analysis. IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2008). PDF

·       Shuiwang Ji, Liang Sun, Rong Jin, Sudhir Kumar, and Jieping Ye. Automated annotation of Drosophila gene expression patterns using a controlled vocabulary. Bioinformatics. 24(17):1881-1888, 2008. PDF

·       Liang Sun, Shuiwang Ji, and Jieping Ye. Adaptive Diffusion Kernel Learning from Biological Networks for Protein Function Prediction. BMC Bioinformatics. 9:162, 2008. PDF

·       Shuiwang Ji and Jieping Ye. Generalized Linear Discriminant Analysis: A Unified Framework and Efficient Model Selection. IEEE Transactions on Neural Networks. Vol. 19, No. 10, pp. 1768-1782, 2008. PDF

·       Jieping Ye, Shuiwang Ji, and Jianhui Chen. Multi-class Discriminant Kernel Learning via Convex Programming. Journal of Machine Learning Research. 9(Apr):719-758. PDF

·       Shuiwang Ji and Jieping Ye. Kernel Uncorrelated and Regularized Discriminant Analysis: A Theoretical and Computational Study. IEEE Transactions on Knowledge and Data Engineering. Vol. 20, No. 10, pp. 1311-1321, 2008. PDF

·       Jieping Ye, Jianhui Chen, Ravi Janardan, and Sudhir Kumar. Developmental Stage Annotation of Drosophila Gene Expression Pattern Images via an Entire Solution Path for LDA. ACM Transactions on Knowledge Discovery from Data. special issue on Bioinformatics. Vol. 2, No. 1, pp. 1-21, 2008. PDF

 

2007

·       Jieping Ye, Zheng Zhao, and Mingrui Wu. Discriminative K-Means for Clustering. The Twenty-First Annual Conference on Neural Information Processing Systems (NIPS 2007). PDF

·       Jieping Ye, Shuiwang Ji, and Jianhui Chen. Learning the Kernel Matrix in Discriminant Analysis via Quadratically Constrained Quadratic Programming. The Thirteenth ACM SIGKDD International Conference On Knowledge Discovery and Data Mining (SIGKDD 2007), pp. 854-863. PDF

·       Jianhui Chen, Zheng Zhao, Jieping Ye, and Huan Liu. Nonlinear Adaptive Distance Metric Learning for Clustering. The Thirteenth ACM SIGKDD International Conference On Knowledge Discovery and Data Mining (SIGKDD 2007). pp. 123-132. PDF

·       Jieping Ye. Least Squares Linear Discriminant Analysis. The Twenty-Fourth International Conference on Machine Learning (ICML 2007), pp. 1087-1093. Technical Report TR-06-003, Department of Computer Science and Engineering, Arizona State University, March, 2006. PDF

·       Jieping Ye, Jianhui Chen, and Shuiwang Ji. Discriminant Kernel and Regularization Parameter Learning via Semidefinite Programming. The Twenty-Fourth International Conference on Machine Learning (ICML 2007), pp. 1095-1102. PDF

·        Jianhui Chen, Jieping Ye, and Qi Li. Integrating Global and Local Structures: A Least Squares Framework for Dimensionality Reduction. IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2007). PDF

·       Vineeth Nallure, Jieping Ye, and Sethuraman Panchanathan. Biased Manifold Embedding: A Framework for Person-Independent Head Pose Estimation. IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2007). PDF

·       Jieping Ye, Zheng Zhao, and Huan Liu. Adaptive Distance Metric Learning for Clustering. IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2007). PDF

·       Jieping Ye and Tao Xiong. SVM versus Least Squares SVM. The Eleventh International Conference on Artificial Intelligence and Statistics (AISTATS 2007), pp. 640–647. PDF

 

2006

·        Jieping Ye et al. Efficient model selection for regularized linear discriminant analysis. The Fifteenth ACM International Conference on Information and Knowledge Management (CIKM 2006), pp. 532–539. PDF

·       Jieping Ye, Ivaylo Ilinkin, Ravi Janardan, and Adam Isom. Multiple structure alignment and consensus identification for proteins. Lecture Notes in Bioinformatics (LNBI), #4175, pp. 115—125 (WABI 2006). Web Server PDF

·        Jieping Ye and Tie Wang. Regularized (Quadratic) Discriminant Analysis for high dimensional, low sample size data. The Twelfth ACM SIGKDD International Conference On Knowledge Discovery and Data Mining (SIGKDD 2006), pp. 454—463. PDF

·        Jieping Ye, Jianhui Chen, Qi Li, and Sudhir Kumar. Classification of Drosophila embryonic developmental stage range based on gene expression pattern images. Computational Systems Bioinformatics Conference (CSB 2006), pp. 293—298. PDF

·        Jieping Ye and Tao Xiong. Null space versus orthogonal linear discriminant analysis. The Twenty-Third International Conference on Machine Learning (ICML 2006), pp 1073—1080. PDF

·        Jieping Ye, Tao Xiong, and Ravi Janardan. CPM: A covariance-preserving projection method. The Sixth SIAM International Conference on Data Mining (SDM 2006), pp. 2434. PDF

·        Tao Xiong, Jieping Ye, and Vladimir Cherkassky. Kernel Uncorrelated and Orthogonal Discriminant Analysis: A Unified Approach. IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2006), pp. 125—131. PDF

·        Jieping Ye, Ravi Janardan, Qi Li, and Haesun Park. Feature Reduction via Generalized Uncorrelated Linear Discriminant Analysis. IEEE Transactions on Knowledge and Data Engineering. Vol. 18, No. 10, pp. 1312—1322, 2006. PDF

·        Jieping Ye and Tao Xiong. Computational and theoretical analysis of null space and orthogonal linear discriminant analysis. Journal of Machine Learning Research. 7(July): 1183—1204, 2006. PDF

·        Qi Li, Jieping Ye, and Chandra Kambhamettu. Spatial Interest Pixels (SIPs): Useful Low-Level Features of Visual Media Data. Journal of Multimedia Tools and Applications.  Vol. 30, No. 1, pp. 89—108, 2006. PDF

 

2005

·        Chris Ding and Jieping Ye. 2-Dimensional Singular Value Decomposition for 2D Maps and Images. Proceedings of the SIAM International Conference on Data Mining (SDM 2005), pp. 2434. PDF

·        Jieping Ye. Characterization of a Family of Algorithms for Generalized Discriminant Analysis on Undersampled Problems. Journal of Machine Learning Research. 6(Apr): 483502, 2005. PDF

·        Jieping Ye, Qi Li, Hui Xiong, Haesun Park, Ravi Janardan, and Vipin Kumar. IDR/QR: An Incremental Dimension Reduction Algorithm via QR Decomposition. IEEE Transactions on Knowledge and Data Engineering. Special Issue on Intelligent Data Preparation. Vol. 17, No. 9, pp. 12081222, 2005. PDF

·        Jieping Ye. Generalized Low Rank Approximations of Matrices. Machine Learning Journal. Vol. 61, pp. 167191, 2005. PDF

·        Jieping Ye and Qi Li. A two-stage linear discriminant analysis via QR decomposition. IEEE Transactions on Pattern Analysis and Machine Intelligence. Vol. 27, No. 6, pp. 929941, 2005. PDF

 

2004

·        Jieping Ye, Ravi Janardan, and Qi Li. Two-Dimensional Linear Discriminant Analysis. The Eighteenth Annual Conference on Neural Information Processing Systems (NIPS 2004), pp. 15691576. PDF

·        Xiong Tao, Jieping Ye, Qi Li, Ravi Janardan, and Vladimir Cherkassky. Efficient Kernel Discriminant Analysis via QR Decomposition. The Eighteenth Annual Conference on Neural Information Processing Systems (NIPS 2004), pp. 15291536. PDF

·        Jieping Ye, Ravi Janardan, and Qi Li. GPCA: An Efficient Dimension Reduction Scheme for Image Compression and Retrieval. The Tenth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (SIGKDD 2004), pp. 354363. PDF

·        Jieping Ye, Qi Li, Hui Xiong, Haesun Park, Ravi Janardan, and Vipin Kumar. IDR/QR: An Incremental Dimension Reduction Algorithm via QR Decomposition. The Tenth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (SIGKDD 2004), pp. 364373. PDF

·        Jieping Ye, Ravi Janardan, Qi Li, and Haesun Park. Feature Extraction via Generalized Uncorrelated Linear Discriminant Analysis. The Twenty-First International Conference on Machine Learning (ICML 2004), pp. 895902. PDF

·        Jieping Ye. Generalized Low Rank Approximations of Matrices. The Twenty-First International Conference on Machine Learning (ICML 2004), pp. 887894. Outstanding Student Paper Award  PDF

·        Qi Li, Jieping Ye, and Chandra Kambhamettu. Linear Projection Methods in Face Recognition under Unconstrained Illumination: A Comparative Study. IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2004). PDF

·        Jieping Ye, Tao Li, Tao Xiong, and Ravi Janardan. Using Uncorrelated Discriminant Analysis for Tissue Classification with Gene Expression Data.  [Datasets] IEEE/ACM Transactions on Computational Biology and Bioinformatics. Vol. 1, No. 4, pp. 181190, 2004. PDF

·        Jieping Ye, Ravi Janardan, and Songtao Liu. Pairwise protein structure alignment based on an orientation independent representation of the backbone geometry.  [Color Figures] [Software & Test Data] Journal of Bioinformatics and Computational Biology. Vol. 2, No. 4, pp. 699717, 2004. PDF

·        Jieping Ye, Ravi Janardan, Cheonghee Park, and Haesun Park. An optimization criterion for generalized discriminant analysis on undersampled problems.  [Color Figures] [Datasets] IEEE Transactions on Pattern Analysis and Machine Intelligence. Vol. 26, No. 8, pp. 982994, 2004. PDF

·        Jieping Ye and Ravi Janardan. Approximate multiple protein structure alignment using the Sum-of-Pairs distance.  [Color Figures] Journal of Computational Biology.  Vol. 11, No. 5, pp. 9861000, 2004. PDF

 

2003

·        Jieping Ye, Ravi Janardan, Cheonghee Park, and Haesun Park. A new optimization criterion for generalized discriminant analysis on undersampled problem. The Third IEEE International Conference on Data Mining (ICDM 2003), pp. 419426. PDF

·        Qi Li, Jieping Ye, and Chandra Kambhamettu. Spatial Interest Pixels (SIPs): Useful Low-Level Features of Visual Media Data. The Third IEEE International Conference on Data Mining (ICDM 2003), pp. 163170. PDF

·        Jieping Ye, Ravi Janardan, and Songtao Liu. Pairwise protein structure alignment based on an orientation-independent representation of the backbone geometry. The Fifteenth IEEE International Conference on Tools with Artificial Intelligence (ICTAI 2003), pp. 28. PDF

 

Book Chapters

·       Jieping Ye and Shuiwang Ji. Discriminant Analysis for Dimensionality Reduction: An Overview of Recent Developments. In Biometrics: Theory, Methods & Applications, edited by N. V. Boulgouris, K.N. Plataniotis, and E.Micheli-Tzanakou, IEEE/Wiley. (In press) PDF

·       Jieping Ye, Ravi Janardan, and Sudhir Kumar. Biological image analysis via matrix approximation. In Encyclopedia of Data Warehousing and Mining (2nd Ed.) edited by John Wang, Idea Group, Inc. Hershey, Pennsylvania. (In press) PDF