Introduction to the course (1/22)
Transcript of some relavant portions of the Roche Genetics CD-ROM. (1/27 and 1/29)
Introduction to microarrays (2/3)
Introduction to NCBI and NIH databases; a tutorial (external link) (2/5)
Signal networks and AI (2/10)
More on microarrays. (2/17)
Data Integration. (2/19)
Representation and reasoning with signal networks (2/24)
Sequence Alignment 1 (3/7)
Sequence Alignment 2 (3/12, 3/24)
;
Sequence Alignment 3 (3/24)
.
FASTA and BLAST: Heuristic methods for sequence alignment (some external links) (3/26)
;
FASTA and BLAST highlights. (3/26)
Multiple Sequence Alignment (4/7)
Genome Sequencing (4/9 -- 4/14)
Slides from a Stanford class (not mine)
Sequence verification and sequence finding -- use of Hidden Markov Models 4/16, 4/21, and 4/23
Phylogenetic trees. See the external slides in the bottom of the
pointers page.
(4/23, 4/28, and 4/30)