A coarse-grained model for simulating IDP conformations PLOS Comput. Biol. 2018, with temperature dependent hydropathy (T-HPS) ACS Cent. Sci. 2019, and salting-out effect (HPS-salt) JCTC 2021.
Script for running the model in HOOMD-Blue.
A predictor of using both sequence charge (SCD) and hydrophobic (SHD) patterning parameters to estimate the scaling exponent of an IDP JCTC 2020.
Script
A self-avoiding walk polymer model with adjusted scaling exponent for interpreting the FRET data JCP 2018.
A model for interpreting Rg and scaling exponent of an IDP from its SAXS measurement JMB 2018.