Publications:
1. RA Jue, NW Woodbury & RF Doolittle (1980) Sequence Homologies among Escherichia-Coli Ribosomal-Proteins - Evidence for Evolutionarily Related Groupings and Internal Duplications. Journal of Molecular Evolution 15: 129-140
2. NW Woodbury & RF Doolittle (1980) Using a Minicomputer in the Study of Protein-Sequence Homology. Journal of Molecular Evolution 15: 141-148
3. RF Doolittle, NW Woodbury & RA Jue (1982) Ribosomal Protein-S1 Is the Product of a Series of Contiguous Duplications. Bioscience Reports 2: 405-412
4. NWT Woodbury & WW Parson (1984) Nanosecond Fluorescence from Isolated Photosynthetic Reaction Centers of Rhodopseudomonas-Sphaeroides. Biochimica Et Biophysica Acta 767: 345-361
5. NW Woodbury, M Becker, D Middendorf & WW Parson (1985) Picosecond Kinetics of the Initial Photochemical Electron- Transfer Reaction in Bacterial Photosynthetic Reaction Centers. Biochemistry 24: 7516-7521
6. NW Woodbury, WW Parson, MR Gunner, RC Prince & PL Dutton (1986) Radical-Pair Energetics and Decay Mechanisms in Reaction Centers Containing Anthraquinones, Naphthoquinones or Benzoquinones in Place of Ubiquinone. Biochimica Et Biophysica Acta 851: 6-22
7. NW Woodbury & WW Parson (1986) Nanosecond Fluorescence from Chromatophores of Rhodopseudomonas-Sphaeroides and Rhodospirillum-Rubrum. Biochimica Et Biophysica Acta 850: 197-210
8. NW Woodbury, LL Roberts, JD Palmer & WF Thompson (1988) A Transcription Map of the Pea Chloroplast Genome. Current Genetics 14: 75-89
9. NW Woodbury, M Dobres & WF Thompson (1989) The Identification and Localization of 33 Pea Chloroplast Transcription Initiation Sites. Current Genetics 16: 433-445
10. JW Stocker, AKW Taguchi, HA Murchison, NW Woodbury & SG Boxer (1992) Spectroscopic and Redox Properties of Sym1 and (M)F195h - Rhodobacter-Capsulatus Reaction Center Symmetry Mutants Which Affect the Initial Electron-Donor. Biochemistry 31: 10356-10362
11. AKW Taguchi, JW Stocker, RG Alden, TP Causgrove, JM Peloquin, SG Boxer & NW Woodbury (1992) Biochemical-Characterization and Electron-Transfer Reactions of Sym1, a Rhodobacter-Capsulatus Reaction Center Symmetry Mutant Which Affects the Initial Electron-Donor. Biochemistry 31: 10345-10355
12. JC Williams, RG Alden, HA Murchison, JM Peloquin, NW Woodbury & JP Allen (1992) Effects of Mutations near the Bacteriochlorophylls in Reaction Centers from Rhodobacter-Sphaeroides. Biochemistry 31: 11029-11037
13. RG Alden, M Hayashi, JP Allen, NW Woodbury, H Murchison & SH Lin (1993) Experimental and Theoretical-Studies of Femtosecond Time- Resolved 3-Dimensional Spectra of Photosynthetic Reaction Centers. Chemical Physics Letters 208: 350-358
14. VI Godik, RE Blankenship, TP Causgrove & N Woodbury (1993) Time-Resolved Tryptophan Fluorescence in Photosynthetic Reaction Centers from Rhodobacter-Sphaeroides. Febs Letters 321: 229-232
15. HA Murchison, RG Alden, JP Allen, JM Peloquin, AKW Taguchi, NW Woodbury & JC Williams (1993) Mutations Designed to Modify the Environment of the Primary Electron-Donor of the Reaction Center from Rhodobacter- Sphaeroides - Phenylalanine to Leucine at L167 and Histidine to Phenylalanine at L168. Biochemistry 32: 3498-3505
16. E Nabedryk, JP Allen, AKW Taguchi, JC Williams, NW Woodbury & J Breton (1993) Fourier-Transform Infrared Study of the Primary Electron-Donor in Chromatophores of Rhodobacter-Sphaeroides with Reaction Centers Genetically-Modified at Residue-M160 and Residue-L131. Biochemistry 32: 13879-13885
17. AKW Taguchi, JW Stocker, SG Boxer & NW Woodbury (1993) Photosynthetic Reaction Center Mutagenesis Via Chimeric Rescue of a Nonfunctional Rhodobacter-Capsulatus Puf Operon with Sequences from Rhodobacter-Sphaeroides. Photosynthesis Research 36: 43-58
18. JM Peloquin, JC Williams, XM Lin, RG Alden, AKW Taguchi, JP Allen & NW Woodbury (1994) Time-Dependent Thermodynamics During Early Electron-Transfer in Reaction Centers from Rhodobacter-Sphaeroides. Biochemistry 33: 8089-8100
19. S Wang, S Lin, X Lin, NW Woodbury & JP Allen (1994) Comparative-Study of Reaction Centers from Purple Photosynthetic Bacteria - Isolation and Optical Spectroscopy. Photosynthesis Research 42: 203-215
20. NW Woodbury, JM Peloquin, RG Alden, XM Lin, S Lin, AKW Taguchi, JC Williams & JP Allen (1994) Relationship between Thermodynamics and Mechanism During Photoinduced Charge Separation in Reaction Centers from Rhodobacter-Sphaeroides. Biochemistry 33: 8101-8112
21. WH Xiao, S Lin, AKW Taguchi & NW Woodbury (1994) Femtosecond Pump-Probe Analysis of Energy and Electron-Transfer in Photosynthetic Membranes of Rhodobacter-Capsulatus. Biochemistry 33: 8313-8322
22. JM Peloquin, S Lin, AKW Taguchi & NW Woodbury (1995) Excitation Wavelength Dependence of Bacterial Reaction-Center Photochemistry .1. Ground-State and Excited-State Evolution. J. Phys. Chem 99: 1349-1356
23. NW Woodbury, S Lin, XM Lin, JM Peloquin, AKW Taguchi, JC Williams & JP Allen (1995) The Role of Reaction-Center Excited-State Evolution During Charge Separation in a Rhodobacter-Sphaeroides Mutant with an Initial Electron-Donor Midpoint Potential 260 Mv above Wild- Type. Chemical Physics 197: 405-421
24. N Woodbury & JP Allen (1995) The pathway, kinetics and thermodynamics of electron transfer in the reaction centers of purple nonsulfer bacteria. In: RE Blankenship, M Madigan & B CE (eds) Anoxygenic Photosynthetic Bacteria. Kluwer Academic Publishing, Netherlands
25. A Freiberg, JP Allen, JC Williams & NW Woodbury (1996) Energy trapping and detrapping by wild type and mutant reaction centers of purple non-sulfur bacteria. Photosynthesis Research 48: 309-319
26. S Lin, WZ Xiao, JE Eastman, AKW Taguchi & NW Woodbury (1996) Low-temperature femtosecond-resolution transient absorption spectroscopy of large-scale symmetry mutants of bacterial reaction centers. Biochemistry 35: 3187-3196
27. S Lin, AKW Taguchi & NW Woodbury (1996) Excitation wavelength dependence of energy transfer and charge separation in reaction centers from Rhodobacter sphaeroides: Evidence for adiabatic electron transfer. J. Phys. Chem. 100: 17067-17078
28. JM Peloquin, S Lin, AKW Taguchi & NW Woodbury (1996) Excitation wavelength dependence of bacterial reaction center photochemistry .2. Low-temperature measurements and spectroscopy of charge separation. Journal of Physical Chemistry 100: 14228-14235
29. AKW Taguchi, JE Eastman, DM Gallo, E Sheagley, WZ Xiao & NW Woodbury (1996) Asymmetry requirements in the photosynthetic reaction center of Rhodobacter capsulatus. Biochemistry 35: 3175-3186
30. JA Jackson, S Lin, AKW Taguchi, JC Williams, JP Allen & NW Woodbury (1997) Energy transfer in Rhodobacter sphaeroides reaction centers with the initial electron donor oxidized or missing. J. Phys. Chem. B 101: 5747-5754
31. A Freiberg, K Timpmann, S Lin & NW Woodbury (1998) Exciton relaxation and transfer in the LH2 antenna network of photosynthetic bacteria. J. Phys. Chem. B 102: 10974-10982
32. A Freiberg, JA Jackson, S Lin & NW Woodbury (1998) Subpicosecond pump-supercontinuum probe spectroscopy of LH2 photosynthetic antenna proteins at low temperature. J. Phys. Chem. A 102: 4372-4380
33. S Lin, J Jackson, AKW Taguchi & NW Woodbury (1998) Excitation wavelength dependent spectral evolution in Rhodobacter sphaeroides R-26 reaction centers at low temperatures: The Q(y) transition region. J. Phys. Chem. B 102: 4016-4022
34. S Devanathan, A Pacheco, L Ujj, M Cusanovich, G Tollin, S Lin & N Woodbury (1999) Femtosecond spectroscopic observations of initial intermediates in the photocycle of the photoactive yellow protein from Ectothiorhodospira halophila. Biophys. J. 77: 1017-1023
35. A Freiberg, K Timpmann, R Ruus & NW Woodbury (1999) Disordered exciton analysis of linear and nonlinear absorption spectra of antenna bacteriochlorophyll aggregates: LH2-only mutant chromatophores of Rhodobacter sphaeroides at 8 K under spectrally selective excitation. J. Phys. Chem. B 103: 10032-10041
36. E Katilius, T Turanchik, S Lin, AKW Taguchi & NW Woodbury (1999) B-side electron transfer in a Rhodobacter sphaeroides reaction center mutant in which the B-side monomer bacteriochlorophyll is replaced with bacteriopheophytin. J. Phys. Chem. B 103: 7386-7389
37. S Lin, JA Jackson, AKW Taguchi & NW Woodbury (1999) B-side electron transfer promoted by absorbance of multiple photons in Rhodobacter sphaeroides R-26 reaction centers. J. Phys. Chem. B 103: 4757-4763
38. CK Tang, JAC Williams, AKW Taguchi, JP Allen & NW Woodbury (1999) P+HA- charge recombination reaction rate constant in Rhodobacter sphaeroides reaction centers is independent of the P/P+ midpoint potential. Biochemistry 38: 8794-8799
39. JG Yodh, YL Lyubchenko, LS Shlyakhtenko, N Woodbury & D Lohr (1999) Evidence for nonrandom behavior in 208-12 subsaturated nucleosomal array populations analyzed by AFM. Biochemistry 38: 15756-15763
40. DC Daniel, M Thompson & NW Woodbury
(2000) Fluorescence intensity fluctuations of individual labeled DNA fragments
and a DNA binding protein in solution at the single molecule level: A
comparison of photobleaching, diffusion, and binding dynamics. J.
Phys. Chem. B 104: 1382-1390
41. S Devanathan, S Lin, MA Cusanovich, N Woodbury & G Tollin (2000) Early intermediates in the photocycle of the Glu46Gln mutant of photoactive yellow protein: Femtosecond spectroscopy. Biophys. J. 79: 2132-2137
42. JE Eastman, AKW Taguchi, S Lin, JA Jackson & NW Woodbury (2000) Characterization of a Rhodobacter capsulatus reaction center mutant that enhances the distinction between spectral forms of the initial electron donor. Biochemistry, 39: 14787-14798
43. M Thompson & NW Woodbury (2000) Fluorescent and photochemical properties of a single zinc finger conjugated to a fluorescent DNA-binding probe. Biochemistry 39: 4327-4338
44. K Timpmann, NW Woodbury & A Freiberg (2000) Unraveling exciton relaxation and energy transfer in LH2 photosynthetic antennas. J. Phys. Chem. B 104: 9769-9771
45. RC Bash, J Yodh, Y Lyubchenko, N Woodbury & D Lohr (2001) Population analysis of subsaturated 172-12 nucleosomal arrays by atomic force microscopy detects nonrandom behavior that is favored by histone acetylation and short repeat length. J. Biol. Chem. 276: 48362-48370
46. S Devanathan, S Lin, MA Cusanovich, N Woodbury & G Tollin (2001) Early photocycle kinetic behavior of the E46A and Y42F mutants of photoactive yellow protein: Femtosecond spectroscopy. Biophysical Journal 81: 2314-2319
47. K Gibasiewiez, VM Ramesh, AN Melkozernov, S Lin, NW Woodbury, RE Blankenship & AN Webber (2001) Excitation dynamics in the core antenna of PSI from Chlamydomonas reinhardtii CC 2696 at room temperature. J. Phys. Chem. B 105: 11498-11506
48. S Lin, E Katilius, ALM Haffa, AKW Taguchi & NW Woodbury (2001) Blue light drives B-side electron transfer in bacterial photosynthetic reaction centers. Biochemistry 40: 13767-13773
49. M Thompson & NW Woodbury (2001) Thermodynamics of specific and nonspecific DNA binding by two DNA-binding domains conjugated to fluorescent probes. Biophysical J. 81: 1793-1804
50. K Timpmann, Z Katiliene, NW Woodbury & A Freiberg (2001) Exciton self trapping in one-dimensional photosynthetic antennas. J. Phys. Chem. B 105: 12223-12225
51. JC Williams, ALM Haffa, JL McCulley, NW Woodbury & JP Allen (2001) Electrostatic interactions between charged amino acid residues and the bacteriochlorophyll dimer in reaction centers from Rhodobacter sphaeroides. Biochemistry 40: 15403-15407
52. DC Daniel, M Thompson & NW Woodbury (2002) DNA-binding interactions and conformational fluctuations of Tc3 transposase DNA binding domain examined with single molecule fluorescence spectroscopy. Biophys. J. 82: 1654-1666
53. K Gibasiewicz, VM Ramesh, S Lin, NW Woodbury & AN Webber (2002) Excitation dynamics in eukaryotic pS I from Chlamydomonas reinhardtii CC 2696 at 10 K. Direct detection of the reaction center exciton states. J. Phys. Chem. B 106: 6322-6330
54. ALM Haffa, S Lin, E Katilius, JC Williams, AKW Taguchi, JP Allen & NW Woodbury (2002) The dependence of the initial electron-transfer rate on driving force in Rhodobacter sphaeroides reaction Centers. J. Phys. Chem. B 106: 7376-7384
55. E Katilius, Z Katiliene, S Lin, AKW Taguchi & NW Woodbury (2002) B side electron transfer in a Rhodobacter sphaeroides reaction center mutant in which the B side monomer bacteriochlorophyll is replaced with bacteriopheophytin: Low-temperature study and energetics of charge-separated states. J. Phys. Chem. B 106: 1471-1475
56. E Katilius, Z Katiliene, S Lin, AKW Taguchi & NW Woodbury (2002) B-side electron transfer in the HE(M182) reaction center mutant from Rhodobacter sphaeroides. J. Phys. Chem. B 106: 12344-12350
57. JG Yodh, N Woodbury, LS Shlyakhtenko, YL Lyubchenko & D Lohr (2002) Mapping nucleosome locations on the 208-12 by AFM provides clear evidence for cooperativity in array occupation. Biochemistry 41: 3565-3574
58. J Babendure, PA Liddell, R Bash, D LoVullo, TK Schiefer, M Williams, DC Daniel, M Thompson, AKW Taguchi, D Lohr & N Woodbury (2003) Development of a Fluorescent Probe For the Study of Nucleosome Assembly and Dynamics. Analytical Biochemistry 317: 1-11
59. B Bowen & N Woodbury (2003) Single-Molecule Fluorescent Lifetime and Anisotropy Measurements of the Red Fluorescent Protein, DsRed, in Solution. Photochemistry and Photobiology 77: 362-369
60. B Bowen & N Woodbury (2003) TOTO Binding Affinity Analysis Using Single-Molecule Fluorescence Spectroscopy. Photochemistry and Photobiology 78: 582–586
61. B Bowen, J Enderlein & N Woodbury (2003) Single-molecule Fluorescence Spectroscopy of TOTO on Poly-AT and Poly-GC DNA. Photochemistry and Photobiology 78: 576–581
62. A Freiberg, M Ratsep, K Timpmann, G Trinkunas & NW Woodbury (2003) Self-trapped excitons in LH2 antenna complexes between 5 K and ambient temperature. Journal of Physical Chemistry B 107: 11510-11519
63. ALM Haffa, S Lin, JC Williams, AKW Taguchi, JP Allen & NW Woodbury (2003) High yield of long-lived B-side charge separation at room temperature in mutant bacterial reaction centers. Journal of Physical Chemistry B 107: 12503-12510
64. Z Katiliene, E Katilius & N Woodbury (2003) Energy Trapping and Detrapping in Reaction Center Mutants from Rhodobacter sphaeroides. Biophysical Journal 84: 3240-3251
65. Z Katiliene, E Katilius & NW Woodbury (2003) Single Molecule Detection of DNA Looping by NgoMIV Restriction Endonuclease. Biophysical Journal 84: 4053-4061
66. E Katilius, J Bever, Z Katiliene, S Lin, AKW Taguchi & N Woodbury (2003) Manipulations of the B-Side Charge-Separated States' Energetics in the Rhodobacter sphaeroides Reaction Center. Journal of Physical Chemistry B 107: 12029-12034
67. S Lin, E Katilius, AKW Taguchi & N Woodbury (2003) Excitation energy transfer from carotenoid to bacteriochlorophyll in the photosynthetic purple bacterial reaction center of Rhodobacter sphaeroides. Journal of Physical Chemistry B 107: 14103-14108
68. G Montano, BP Bowen, JT LaBelle, N Woodbury, VB Pizziconi & RE Blankenship (2003) Characterization of Chlorobium tepidum chlorosomes- A calculation of bacteriochlorophyll c per chlorosome and oligomer modeling. Biophysical Journal 85: 2560-2565
69. A Scruggs & N Woodbury (2003) Optical Processing of Bacterial Libraries for Directed Evolution. Biotechnology and Bioengineering 84: 445-451
70. B Bowen, A Scruggs, J Enderlein, M Sauer & N Woodbury (2004) Implementation of neural networks for the identification of single-molecules. Journal of Physical Chemistry A 108: 4799-4804
71. ALM Haffa, S Lin, JAC Williams, B Bowen, AKW Taguchi, JP Allen & N Woodbury (2004) Controlling the Pathway of Photosynthetic Charge Separation in Bacterial Reaction Centers. Journal of Physical Chemistry B 108: 4-7
72. Z Katiliene, E Katilius, GH Uyeda, JC Williams & NW Woodbury (2004) Increasing the rate of energy transfer between the LHI antenna and the reaction center in the photosynthetic bacterium Rhodobacter sphaeroides. Journal of Physical Chemistry B 108: 3863-3870
73. E Katilius & N Woodbury (2004) Purple bacteria: Electron Acceptors and Donors. In: WJ Lennarz & MD Lane (eds) Encyclopedia of Biological Chemistry. Academic Press/Elsevier Science
74. E Katilius & N Woodbury (2004) Multi-Photon Excitation Fluorescence Correlation Spectroscopy of Fluorescent DNA Base Analogs. Proc. of SPIE 5323: 160-167
75. E Katilius, JL Babendure, S Lin & N Woodbury (2004) Electron Transfer Dynamics in Rhodobacter sphaeroides Reaction Center Mutants with a Modified Ligand for the Monomer Bacteriochlorophyll on the Active Side. Photosynthesis Research 81: 165-180
76. RJ Sension, AG Cole, AD Harris, CC Fox, N Woodbury, S Lin & ENG Marsh (2004) Photolysis and Recombination of Adenosylcobalamin Bound to Glutamate Mutase. J. Am. Chem. Soc. 126: 1598-1599
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