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242. H. Liu, M. Matthies, J. Russo, L. Rovigatti, R. Narayanan, T. Diep, D. McKeen, O. Gang, N. Stephanopoulos, F. Sciortino, H. Yan, F. Romano, P. Sulc*, Inverse Design of a Pyrochlore Lattice of DNA Origami Through Model-driven Experiments, Science in revision (2024).

241. S. Fan, S. Wang, L. Ding, T. Speck, H. Yan*, S. Nussberger*, N. Liu*, Shape Matters: Autonomously Self-organized DNA Nanorobots as Masseur and Gatekeeper for Synthetic Cells, Nature Materials in revision (2024).

240. C. Zhang*, R. Wu, F. Sun, Y. Lin, Y. Zhang, Y. Liang, Y. Chen., L. Liu, Q. Ouyang*, L. Qian*, H. Yan*. Parallel DNA Storage by Programming and Printing Epigenetic Bits, Nature in review (2024).

239. Y. Gao, Y. Sha, Y. Liu, J. Chen, M. Li, S. Gao, Q. Li, X. Zuo, C. Chen, T. Zhang, K. Wang, P. Wang, G. Chen, X. Liu*, H. Yan*, C. Fan*, Massively Parallel sub-10-nanometer lithography of Graphene with DNA-silica Composite Masked Material Manufacturing, Nature Nanotechnology submitted (2024).

238. G. B. M. Wisna, D. Sukhareva, J. Zhao, D. Satyabola, H. Yan*, R. F. Hariadi*, DNA Origami Cryptography in 2D and 3D Space with Improved Detection and Fast Readout Enabled by HighSpeed DNA-PAINT and Unsupervised Clustering, Nat. Comm. submitted (2024).

237. Y. Xuǂ, R. Zhengǂ, A. Prasadǂ, M. Liu, X. Zhou, R. Porter, M. Sample, E. Poppleton,J. Procyk, H. Liu, H. Lee, H. Yan*, P. Sulc*, N. Stephanopoulos*, High-affinity binding to the SARS-CoV-2 spike trimer by a multivalent protein-DNA synthetic antibody, J. Am. Chem. Soc. submitted (2024).

236. Y. Wang, H. Wang, Y. Li, C. Yang, Y. Tang, X. Lu, J. Fan, W. Tang, Y. Shang, H. Yan*, J. Liu*, B. Ding*, Chemically Conjugated Branched Staples for Super-DNA Origami, J. Am. Chem. Soc. in press (2024).

235. T. Yip, X. Qi, H. Yan*, Y. Chang*, RNA Origami Functions as a Self-adjuvanted Nanovaccine Platform for Cancer Immunotherapy, ACS Nano in revision (2024).


234. C. Simmons, H. Skyler, P. Sulc, N. Stephanopoulos*, H. Yan*, Self-assembling DNA Crystal Hosted Minor Groove Binders and Their Structure Determination with Crystallography, J. Am. Chem. Soc. 145, 48, 26075–26085 (2023).

233. R.P. Narayanan, A. Prasad, A. Buchberger, L. Zhou, J. Bernal-Chanchavac, T. MacCulloch, N.E. Fahmi, H. Yan, F. Zhang, M.J. Webber*, N. Stephanopoulos*, Supramolecular polymerization of DNA nanostructures using high-affinity host-guest interactions, Small 230785 (2023).

232. L. Yu, H. Yan*, DNA-based Computation for Multiple Biomarkers. Nature Biomedical Engineering 7, 1535-1536 (2023).

231. L. Yu, Y. Xu, M. Al-Amin, S. Jiang, M. Sample, A. Prasad, N. Stephanopoulos, P. Sulc, H. Yan*, CytoDirect: a Nucleic Acid Nanodevice for Specific and Efficient Delivery of Functional Payloads to the Cytoplasm, J. Am. Chem. Soc. 145, 50, 27336–27347 (2023).

230. J. Yang, K. Jahnke, L. Xin, X. Jing, P. Zhan, A. Peil, A. Griffo, M. Skugor, D. Yang, S. Fan, K. Gopfrich*, H. Yan*, P. Wang*, N. Liu*, Modulating Lipid Membrane Morphology by Dynamic DNA Origami Networks, Nano Letters 23, 6330-6336 (2023).

229. K. Dai, C. Gong, Y. Xu, F. Ding, X. Qi, X. Tu, L. Yu, X. Liu, J. Li, C. Fan, H. Yan*, G. Yao* Single-Stranded RNA Origami-based Epigenetic Immunomodulation, Nano Letters 23, 7188-7196 (2023).

228. K. Dai, Y. Xu, Y. Yang, J. Shen, X. Liu, X. Tu, L. Yu, X. Qi, J. Li, L. Wang, X. Zuo, Y. Liu*, H. Yan*, C. Fan*, G. Yao*, Edge Length-Programmed Single-Stranded RNA Origami for Predictive Innate Immune Activation and Therapy, J. Am. Chem. Soc. 145, 17112-17124 (2023).

227. Y. Tang, H. Liu, Q. Wang, X. Qi, L. Yu, P. Sulc, F. Zhang, H. Yan*, S. Jiang*, DNA Origami Tessellations, J. Am. Chem. Soc. 145, 25, 13858-13868 (2023).


226. D. Fu', R. Pradeep', A. Prasad', F. Zhang, D. Williams, J. Schreck, H. Yan* and J. Reif*. Automated design of 3D DNA origami with non-rasterized 2D curvature, Science Advances 8, eade445, (2022).

225. X. Zhou', D. Satyabola', H. Liu, S. Jiang, X. Qi, L. Yu, S. Lin, Y. Liu, N.W. Woodbury*, H. Yan*. Two-Dimensional Excitonic Networks Directed by DNA Templates as an Efficient Model Light-Harvesting and Energy Transfer System, Angew. Chem. Int. Ed. 61, e2022112, (2022).

224. R. Pradeep', J. Procyk', P. Nandi, A. Prasad, Y. Xu, E. Poppleton, D. Williams, F. Zhang, H. Yan, P. Chiu*, N. Stephanopoulos*, and P. Sulc*, Coarse-Grained Simulations for the Characterization and Optimization of Hybrid Protein-DNA Nanostructures, ACS Nano 16, 14086-14096, (2022).

223. L. Ma, Y. Liu, C. Han, A. Movsesyan, P. Li, H. Li, P. Tang, Y. Yuan, S. Jiang, W. Ni, H. Yan, A. Govorov, Z. Wang, X. Lan*, DNA-Assembled Chiral Satellite-Core Nanoparticle Superstructures: Two-State Chiral Interactions from Dynamic and Static Conformations, Nano Letters 22, 4784−4791, (2022).

222. K. Chen, F. Xu, Y. Hu, H. Yan*, L. Pan*, DNA Kirigami Driven by Polymerase-Triggered Strand Displacemen, Small 18, 2201478, (2022).

221. X. Zhou, H. Liu, F. Djutanta, D. Satyabola, S. Jiang, X. Qi, L. Yu, S. Lin, R.F. Hariadi, Y. Liu, N.W. Woodbury*, H. Yan*, DNA-Templated Programmable Excitonic Wires for Micron-Scale Exciton Transport, Chem. 8, 2442-2459, (2022).

220. X. Zhou, S. Lin, H. Yan*, Interfacing DNA nanotechnology and biomimetic photonic complex: advances and prospects in energy and biomedicine, J. Nanobiotechnology 20, 257, (2022).

219. C. Simmons', T. MacCulloch', M. Krepl, M. Matthies, A. Buchberger, I. Crawford, J. Sponer, P. Sulc, N. Stephanopoulos*, H. Yan*, The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly, Nat. Commun. 13, 3112, (2022).

218. L. Liu, F. Hong, H. Liu, X. Zhou, S. Jiang, P. Sulc, J. Jiang*, H. Yan*, A localized DNA Finite State Machine with Temporal Resolution, Science Advances 8, eabm9530, (2022).

217. J. Bohlin', E. Poppleton', M. Matthies', J. Procyk', A. Mallya, H. Yan, P. Sulc*, Design and simulation of DNA, RNA, and hybrid protein-nucleic acid nanostructures with OxView, Nature Protocols 17, 1762�1788, (2022).

216. C. Zhang*, X. Ma, X. Zheng, Y. Ke, K. Chen, D. Liu, Z. Lu, J. Yang*, H. Yan*, Programmable Allosteric DNA Regulations for Molecular Networks and Nanomachines, Science Advances 8, eabl4589, (2022).

215. S. Dey', A. Dorey', L. Abraham', Y. Xing, I. Zhang, F. Zhang, S. Howorka*, H. Yan*, A Reversibly Gated Protein-Transporting Membrane Channel Made of DNA, Nat. Commun. 13, 2271, (2022).


214. H. Liu, F. Hong, F. Smith, J. Goertz, T. Ouldridge, M. Stevens, H. Yan, P. Sulc*, Kinetics of RNA and RNA:DNA hybrid strand displacement, ACS Synth. Biol. 10, 3066-3073, (2021).

213. Y. Liu, L. Ma, S. Jiang, C. Han, P. Tang, H. Yang, X. Duan, N. Liu*, H. Yan*, X. Lan*, DNA Programmable Self-Assembly of Planar, Thin-Layered Chiral Nanoparticle Superstructures with Complex Two-Dimensional Patterns, ACS Nano 15, 16664-16672, (2021).

212. T. Yuan, Y. Shao, X. Zhou, Q. Liu, Z. Zhu, B. Zhou, Y. Dong, N. Stephanopoulos, S. Gui*, H. Yan*, D. Liu*, Highly Permeable DNA Supramolecular Hydrogel Promotes Neurogenesis and Functional Recovery after Completely Transected Spinal Cord Injury, Advanced Materials 33, 2102428, (2021).

211. Y. Zhang, Z. Qu, . Jiang, Y. Liu, R. Narayanan, D. Williams, X. Zuo, L. Wang, H. Yan, H. Liu* & C. Fan, Prescribing Silver Chirality with DNA Origami, J. Am. Chem. Soc 143, 8639-8646, (2021).

210. S. Jiang, N. Pal, F. Hong, N. E. Fahmi, H. Hu, M. Vrbanac, H. Yan*, N. G. Walter*, Y. Liu*, Regulating DNA Self-Assembly Dynamics with Controlled Nucleation, ACS Nano 15, 5384-5396, (2021).

209. S. Dey, C. Fan*, K. V. Gothelf*, J. Li*, C. Lin*, L. Liu, N. Liu*, M. A. D. Nijenhuis, B. Sacca*, F. C. Simmel*, H. Yan* & P. Zhan, DNA Origami, Nat. Rev. Methods Primers 1, 13, (2021).


208. S. Jiang, Z. Ge, S. Mou, H. Yan*, C. Fan*, Designer DNA Nanostructures for Therapeutics, Chem 7, 1156-1179, (2020).

207. G. Yao', F. Zhang', F. Wang', T. Peng, H. Liu, E. Poppleton, P. Sulc, S. Jiang, L. Liu, C. Gong, X. Jing, X. Liu, L. Wang, Y. Liu, C. Fan*, H. Yan*, Meta-DNA Structures, Nat. Chem. 12, 1067-1075, (2020).

206. C.R. Simmons', T. MacCulloch', F. Zhang, Y. Liu, N. Stephanopoulos & H. Yan, A Self-Assembled Rhombohedral DNA Crystal Scaffold with Tunable Cavity Sizes and High Resolution Structural Detail, Angew. Chem. Int. Ed. 59, 18619-18626, (2020).

205. S. Jiang, F. Zhang, H. Yan, Complex assemblies and crystals guided by DNA, Nat. Mater. 19, 694-700, (2020).

204. J. Georges, X. Qi, X. Liu, Y. Zhou, E. C. Woolf, A. Valeri, Z. Al-Atrache, E. Belykh, B. Feuerstein, M. Preul, A. C. Scheck, M. Reiser, T. Anderson, J. Gopez, D. Appelt, S. Yocom, J. Eschbacher, H. Yan, P. Nakaji, A Fluorescent Aptamer Provides Rapid and Specific Ex Vivo Diagnosis of Central Nervous System Lymphoma from Rodent Xenograft Biopsies, J. Neurosurg. 134, 1728-1737, (2020).

203. J. Li', J. Dai', S. Jiang', M. Xie', T. Zhai, L. Guo, S. Cao, S. Xing, Z. Qu, Y. Zhao, F. Wang, Y. Yang, L. Liu, X. Zuo, L. Wang*, H. Yan*, C. Fan*, Encoding quantized fluorescence states with fractal DNA frameworks, Nat. Commun. 11, 2185, (2020).

202. X. Qi, X. Liu, L. Matiski, R. Rodriguez Del Villar, T. Yip, F. Zhang, S. Sokalingam, S. Jiang, L. Liu, H. Yan, Y. Chang, RNA Origami Nanostructures for Potent and Safe Anti-Cancer Immunotherapy, ACS Nano 14, 4727-4740, (2020).

201. F. Hong, D. Ma, K, Wu, L.A. Mina, R.C. Luiten, Y. Liu, H. Yan*, A.A. Green*, Precise and Programmable Detection of Mutations Using Ultraspecific Riboregulators, Cell 180, 1018-1032, (2020).

200. G. Yao, J. Li, Q. Li, X. Chen, X. Liu, F. Wang, Z. Qu, Z. Ge, R.P. Narayanan, D. Williams, H. Pei, X. Zuo, L. Wang, H. Yan, B.L. Feringa*, C. Fan*, Programming nanoparticle valence bonds with single-stranded DNA encoders, Nature Materials 19, 781-788, (2020).


199. C. Zhang*, Z. Wang, Y. Liu, J. Yang, X. Zhang, Y. Li, L. Pan, Y. Ke*, H. Yan*, Nicking-Assisted Reactant Recycle to Implement Entropy-Driven DNA Circuit, J. Am. Chem. Soc. 141, 17189-17197, (2019).

198. Z. Zhao, C. Wang, H. Yan,* Y. Liu*, Soft Robotics Programmed with Double Crosslinking DNA Hydrogels, Advanced Functional Materials 1905911, (2019).

197. X. Jing, F. Zhang, P. Pan, X. Dai, J. Li, L. Wang, H. Yan, C. Fan, Solidifying framework nucleic acids with silica, Nature Protocols 14, 2416-2436, (2019).

196. X. Wang, A. Chandrasekaran, R. Arun, Z. Shen, Y. Ohayon, T. Wang, M. Kizer, R. Sha, C. Mao, H. Yan, X. Zhang, S. Liao, B. Ding, B. Chakraboty, N. Jonoska, D. Niu, H. Gu, J. Chao, X. Gao, Y. Li, T. Ciengshin, N. Seeman, Paranemic Crossover DNA: There and Back Again, Chemical Reviews 119, 6273-6289, (2019).

195. Y. Zhou, X. Qi, Y. Liu, F. Zhang, H. Yan, DNA Nanoscaffold-Assisted Selection of Femtomolar Bivalent Aptamers for Human-Thrombin with Potent Anticoagulant Activity, ChemBioChem 20, 2494-2503 (2019).

194. S. Mandal', X. Zhou', S. Lin, H. Yan, N. Woodbury, Directed Energy Transfer through DNA-Templated J-aggregates, Bioconjugate Chemistry 30, 1870-1879, (2019).

193. X. Zhou', S. Mandal', S. Jiang, S. Lin, J. Yang, Y. Liu, D. Whitten, N. Woodbury, H. Yan, Efficient Long-rnage, Directional Energy Transfer through DNA-Templated Dye Aggregates, J. Am. Chem. Soc. 141, 8473-8481, (2019).

192. L. Xin, M. Lu, S. Both, M. Pfeifer, M. Urban, C. Zhou, H. Yan, T. Weiss, N. Liu, K. Lindfors, Watching a Single Fluorofphore Molecule Walk into a Plasmonic Hotspot, ACS Photonics 6, 985-993, (2019).

191. Y. Xu, S. Jiang, C. Simmons, R. Narayanan, F. Zhang, A. Aziz, H. Yan, N. Stephanopoulos*, Tunable Nanoscale Cages from Self-Assembling DNA and Protein Building Blocks, ACS Nano 13, 3545-3554, (2019).

190. H. Jun', F. Zhang', T. Shepherd, S. Ratanalert, X. Qi, H. Yan, M. Bathe*, Autonomously designed free-form 2D DNA origami, Science Advances 5, eaav0655, (2019).

189. Z. Ge, J. Fu, M. Liu, S. Jiang, A. Andreoni, X. Zuo, Y. Liu, H. Yan*, C. Fan*, Constructing Submonolayer DNA Origami Scaffold on Gold Electrode for Wiring of Redox Enzymatic Cascade Pathways, ACS Appl. Mater. Interfaces 11, 13881-13887 (2019).

188. Z. Ge, Z. Su, C. R. Simmons, J. Li, S. Jiang, W. Li, Y. Yang, Y. Liu*, W. Chiu, C. Fan*, H. Yan*, Redox Engineering of Cytochrome c using DNA Nanostructure-Based Charged Encapsulation and Spatial Control, ACS Appl. Mater. Interfaces 11, 13874-13880 (2019).


187. F. Hong, S. Jiang, X. Lan, R. Narayanan, P. Sulc, F. Zhang*, Y. Liu*, H. Yan*, Layered-Crossover Tiles with Precisely Tunable Angles for 2D and 3D DNA Crystal Engineering, J. Am. Chem. Soc. 140, 14670-14676, (2018).

186. X. Qi', F. Zhang'*, Z. Su', S. Jiang, D. Han, B. Ding, Y. Liu, W. Chiu, P. Yin, H. Yan*, Programing Molecular Topologies from Single-stranded Nucleic Acids, Nature Commun. 9, 4579, (2018).

185. D. Jiang', Z. Ge', H. Im, C. England, D. Ni, J. Hu, L. Zhang, C. Kutyreff, Y. Yan, Y. Liu, S. Cho, J. Engle, J. Shi, P. Huang, C. Fan*, H. Yan*, W. Cai*, DNA-origami nanostructures can exhibit preferential renal uptake and alleviate acute kidney injury, Nature Biomed. Eng. 2, 865-877, (2018).

184. X. Lan*, T. Liu, Z. Wang, A. Govorov*, H. Yan, Y. Liu*, DNA-Guided Plasmonic Helix with Switchable Chirality, J. Am. Chem. Soc. 140, 11763-11770, (2018).

183. F. Zhang', C. Simmons', J. Gates, Y. Liu, H. Yan*, Self-Assembly of a 3D DNA Crystal Structure with Rationally Designed Six-Fold Symmetry, Angew Chem Int Ed. 57, 12504-12507, (2018).

182. X. Liu', F. Zhang', X. Jing', M. Pan, P. Liu, W. Li, B. Zhu, J. Li, H. Chen, L. Wang, J. Lin, Y. Liu, D. Zhao, H. Yan* and C. Fan*, Complex silica composite nanomaterials templated with DNA origami, Nature 559, 593-598, (2018).

181. J. Li, A. Johnson-Buck, Y. Yang, W. Shih, H. Yan, N. Walter*, Exploring the speed limit of toehold exchange with a cartwheeling DNA acrobat, Nature Nanotechnol. 13, 723-729, (2018).

180. S. Li, Q. Jiang, S. Liu, Y. Zhang, Y. Tian, C. Song, J. Wang, Y. Zou, G. J. Anderson, J. Han, Y. Chang, Y. Liu, C. Zhang, L. Chen, G. Zhou, G. Nie*, H. Yan*, B. Ding*, Y. Zhao*, A DNA nanorobot functions as a cancer therapeutic in response to a molecular trigger in vivo, Nature Biotechnology 36, 258-264, (2018).

179. E. Boulais, N. Sawaya, R. Veneziano, A. Andreoni, J. Banal, T. Kondo, S. Mandal, S. Lin, G. Schlau-Cohen, N. Woodbury, H. Yan*, A. Aspuru-Guzik*, M. Bathe*, Programmed coherent coupling in a synthetic DNA-based excitonic circuit, Nature Materals 17, 159-166, (2018).


178. Y. R. Yang, J. Fu, S. Wootten, X. Qi, M. Liu, H. Yan, Y. Liu* 2D Enzyme Cascade Network with Efficient Substrate Channeling by Swinging Arms, ChemBioChem. DOI: 10.1002/cbic.201700613 (2017).

177. D. Han', X. Qi', C. Myhrvold, B. Wang, M. Dai, S. Jiang, M. Bates, Y. Liu, B. An*, F. Zhang*, H. Yan* and P. Yin*, Single-stranded DNA and RNA Origami, Science 358, eaao2648, (2017).

176. F. Zhang, H. Yan*, DNA self-assembly scaled up, Nature 552, 34-35, (2017).

175. A. Carey, H. Zhang, M. Liu, D. Sharaf, N. Akram, H. Yan, S. Lin, N. Woodbury*, D. Seo*, Enhancing Photocurrent Generation in Photosynthetic Reaction Center-based Photoelectrochemical Cells with Biomimetic DNA Antenna, ChemSusChem 10, 4457-4460, (2017).

174. S. Jiang, F. Hong, H. Hu, H. Yan*, Y. Liu*, Understanding the Elementary Steps in DNA Tile-Based Self-Assembly, ACS Nano. 11, 9370-9381, (2017).

173. J. Li, A. A. Green, H. Yan, C. Fan, Engineering nucleic acid structures for programmable molecular circuitry and intracellular biocomputation, Nature Chem. 9, 1056-1067, (2017).

172. C. Simmons, F. Zhang, T. MacCulloch, N. Fahmi, N. Stephanopoulos, Y. Liu, N. Seeman, H. Yan, Tuning the Cavity Size and Chirality of Self-Assembling 3D DNA Crystals. J. Am. Chem. Soc. 139, 11254-11260, (2017).

171. D. Mieritz, X. Li, A. Volosin, M. Liu, H. Yan, N. Walter, D. Seo, Tracking Single DNA Nanodevices in Herarchically Meso-Macroporous Antimony-Doped Tin Oxide Demonstrates Finite Confinement, Langmuir 33, 6410-6418, (2017).

170. F. Hong, F. Zhang, Y. Liu*, H. Yan*, DNA Origami:Scaffolds for Creating Higher Order Structures, Chem. Rev. 117, 12584-12640, (2017).

169. H. Zhang, A. Carey, K. Jeon, M. Liu, T. Murell, J. Locsin, S. Lin, H. Yan, N. Woodbury, D. Seo, A Highly Stable and Scalable Photosynthetic Reaction Center-Graphene Hybrid Electrode System for Biomimetic Solar Energy Transduction, J. Mater. Chem. A. 5, 6038-6041, (2017).

168. F. Zhang, F. Hong, H. Yan*, DNA Origami Tiles: Nanoscale Mazes, Nature Nanotechnol.12, 189-190, (2017).

167. Y. Dong, Y. Yang, Y. Zhang, D. Wang, X. Wei, S. Banerjee, Y. Liu, Z. Yang, H. Yan*, D. Liu*, Cuboid Vesicles Formed by Frame-guided Assembly on DNA Origami Scaffolds, Angew Chem Int Ed. 156, 1586-1589, (2017).

166. A. Andreoni, S. Lin, H. Liu, R. E. Blankenship, H. Yan, N. Woodbury, Orange Carotenoid Protein as a Control Element in an Antenna System based on a DNA Nanostructure, Nano Letters 17, 1174-1180, (2017).


165. F. Hong, S. Jiang, T. Wang, Y. Liu*, H. Yan*, 3D Framework DNA origami with Layered Crossovers, Angew Chem Int Ed. 128, 13024-13027, (2016).

164. A. Carey, H. Zhang, D. Mieritz, A. Volosin, A. Gardiner, R. Cogdell, H. Yan, D. Seo, S. lin, N. Woodbury*, Photocurrent generation by photosynthetic purple bacterial reaction centers interfaced with a porous antimony-doped tin oxide (ATO) electrode, ACS Appl. Matter. Interfaces 8, 25104-25110, (2016).

163. J. Fu*, Y. Yang, S. Dhakal, Z. Zhao, M. Liu, T. Zhang, N. Walter, H. Yan, Assembly of Multi-Enzyme Complexes on DNA Nanostructures, Nature Protocols 11, 2243-2273, (2016).

162. C. Simmons, F. Zhang, J. Birktoft, X. Qi, D. Han, Y. Liu, R. Sha, H. Abdallah, C. Hernandez, Y. Ohayon, N. Seeman*, H. Yan*, Construction and Structure Determination of a Three-dimensional DNA Crystal, J. Am. Chem. Soc. 138, 10047-10054, (2016).

161. R. Veneziano, S. Ratanalert, K. Zhang, F. Zhang, H. Yan, W. Chiu, M. Bathe*, Designer nanoscale DNA assemblies programmed from the top down, Science 10.1126/science.aaf4388 (2016).

160. F. Zhang*, S. Jiang, W. Li, A. Hunt, Y. Liu*, H. Yan*, Self-assembly of Complex DNA Tessellations using low symmetry multi-arm DNA tiles, Angew Chem Int Ed. 55, 8860-8863, (2016).

159. G. Ke, M. Liu, S. Jiang, X. Qi, Y. R. Yang, S. Wootten, F. Zhang, Z. Zhu, Y. Liu*, C. J. Yang*, H. Yan*, Directional Regulation of Enzyme Pathways via the Control of Substrate Channeling on a DNA Origami Scaffold, Angew Chem Int Ed. 55, 7483-7486, (2016).

158. M. Liu, J. Fu, X. Qi, S. Wootten, N. Woodbury, Y. Liu*, H. Yan*, A three-enzyme pathway with an optimized geometric arrangement to facilitate substrate transfer, ChemBioChem 17, 1097-1101, (2016).

157. W. Li, F. Zhang, H. Yan*, Y. Liu*, DNA Based Arithmetic Function: Half Adder Based on DNA Strand Displacement, Nanoscale 8, 3775-3784, (2016).

156. Z. Zhao, J. Fu, S. Dhakal, A. Johnson-Buck, M. Liu, T. Zhang, N. Woodbury, Y. Liu, N. Walter, H. Yan*, Nano-caged Enzymes with Enhanced Catalytic Activity and Increased Stability against Protease Digestion, Nature Commun. 7, 10619 (2016).

155. S. Dhakal, M. R. Adendorff, M. Liu, H. Yan*, M. Bathe*, N. G. Walter*, Rational design of DNA-actuated enzyme nanoreactors guided by single molecule analysis, Nanoscale 8, 3125-3137, (2016).

154. C. Zhang, J. Yang, S. Jiang, Y. Liu*, H. Yan*, DNAzyme-based Logic Gate-mediated DNA Self-assembly, Nano Letters 16, 736-741, (2016).


153. H. Yan, Y. Zhang, DNA/RNA-Based Nanostructures for Cancer Nanomedicine, Section III: Novel Nanometerials for Diagnosis and Therapy, CaNanoPlan 14-19, (2015).

152. F. Zhang, S. Jiang, S. Wu, Y. Li, C. Mao, Y. Liu*, H. Yan*, Complex wireframe DNA origami nanostructures with multi-arm junction vertices, Nature Nanotechnol. 10, 779-784, (2015).

151. Y. Yang, Y. Liu, H. Yan*, DNA nanostructures as programmable biomolecular scaffolds, Bioconjugate Chemistry 26, 1381-1395, (2015).

150. J. F. Georges, X. Liu, J. Eschbacher, J. Nichols, M. A. Mooney, A. Joy, R. F. Spetzler, B. G. Feuerstein, M. C. Preu, T. Anderson, H. Yan, P. Nakaji*, Use of a Conformational Switching Aptamer for Rapid and Specific Ex Vivo Identification of Central Nervous System Lymphoma in a Xenograft Model. PloS one 10(4), (2015).

149. A. Samanta, S. Banerjee, Y. Liu*, DNA nanotechnology for nanophotonic applications, Nanoscale 7, 2210-2220, (2015).


148. K. Pan, D. N. Kim, F. Zhang, M. Adendorff, H. Yan*, M. Bathe*, Lattice-free prediction of three-dimensional structure of programmed DNA assemblies. Nature Commun. 5, 5078, (2014).

147. P. Dutta, S. Levenberg, A. Loskutov, D. Jun, R. Saer, J. Beatty, S. Lin, Y. Liu*, N. Woodbury*, H. Yan*, A DNA-Directed Light-Harvesting/Reaction Center System, J. Am. Chem. Soc. 136, 16618-16625 (2014).

146. A. Samanta, Y. Zhou, S. Zou, H. Yan, Y. Liu*, Fluorescence Quenching of Quantum Dots by Gold Nanoparticles: a Potential Long Range Spectroscopic Ruler, Nano Letters 14, 5052-5057, (2014).

145. F. Zhang, J. Nangreave, Y. Liu, H. Yan*, Structural DNA Nanotechnology: State of the Art and Future Perspective, J. Am. Chem. Soc. 136, 11198-11211, (2014).

144. D. Wang, S. Capehart, S. Pal, M. Liu, L. Zhang, J. Schuck, Y. Liu, H. Yan, M. Francis, J. De Yoreo*, Hierarchical Assembly of Plasmonic Nanostructures using Virus Capsid Scaffolds on DNA Origami Templates, ACS Nano 8, 7896-7904, (2014).

143. X. Wei, J. Nangreave, Y. Liu*, Uncovering the Self-Assembly of DNA Nanostructures by Thermodynamics and Kinetics, Accounts Chem. Res. 47, 1861-1870, (2014).

142. J. Flory, C. Simmons, S. Lin, T. Jonhson, A. Andreoni, J. Zook, G. Chirlanda, Y. Liu, H. Yan, and P. Fromme*, Low Temperature Assembly of Functional 3D DNA-PNA-Protein Complexes, J. Am. Chem. Soc. 136, 8283-8295, (2014).

141. A. Johnson-Buck, S. Jiang, H. Yan, and N. G. Walter*, DNA-Cholesterol Barges as Programmable Membrane-Exploring Agents, ACS Nano 8, 5641-5649, (2014).

140. L. Liang, J. Li, Q. Li, Q. Huang, J. Shi, H. Yan, and C. Fan*, Single-particle Tracking and Modulation of Cell Entry Pathways of a Tetrahedral DNA Nanostructure in Live Cells, Angew Chem Int Ed. 126, 7879-7884, (2014).

139. J. Fu*, Y. R. Yang, A. Johnson-Buck, Y. Liu, N. G. Walter, N. W. Woodbury, and H. Yan*, Multi-enzyme Complexes on DNA Scaffolds Capable of Substrate Channeling with an Artificial Swinging Arm, Nature Nanotechnol. 9, 531-536, (2014).

138. S. Jiang, H. Yan, and Y. Liu*, Kinetics of DNA Tile Dimerization, ACS Nano. 8, 5826-5832, (2014).

137. P. K. Dutta, S. Lin, A. Loskutov, S. Levenberg, R. Saer, J. T. Beatty, Y. Liu, H. Yan,* N. Woodbury*, An Engineered System to Enhance and Control the Absorption Cross-section of Photosynthetic Reaction Center, J. Am. Chem. Soc. 136, 4599-4604, (2014).

136. W. Li, Y. Yang, S. Jiang, H. Yan, Y. Liu*, Controlled Nucleation and Growth of DNA Tile Arrays within Prescribed DNA Origami Frames and Their Dynamics, J. Am. Chem. Soc. 136, 3724-3727, (2014).

135. A. Samanta, Z. Deng, Y. Liu*, Infrared Emitting Quantum Dots: DNA Conjugation and DNA Origami Directed Self-Assembly, Nano Scale 6, 4486-4490, (2014).


134. A. Samanta, Z. Deng, H. Yan, Y. Liu*, A perspective on Functionalizing Colloidal Quantum Dots with DNA, Nano Research 6, 853-870, (2013).

133. D. Han, S. Jiang, A. Samanta, Y. Liu, H.Yan*, Unidirectional Scaffold-Strand Arrangement in DNA Origami, Angew Chem Int Ed. 52, 9031-9034, (2013).

132. Q. Mei, R. H. Johnson, X. Wei, F. Su, Y. Liu, L. Kelbauskas, S. Lindsay, D. R. Meldrum, and H. Yan, On-chip isotachophoresis separation of functional DNA origami capture nanoarrays from cell lysate, Nano Research 6, 712-719, (2013).

131. M. Liu, J. Fu*, C. Hejesen, Y. Yang, N. W. Woodbury, K. Gothelf, Y. Liu, H. Yan*, A DNA Tweezer-Actuated Enzyme Nanoreactor, Nature Comm. 4:2127 (2013).

130. S. Pal, P. Dutta, H. Wang, Z. Deng, S. Zou, H. Yan, Y. Liu*, Quantum Efficiency Modification of Organic Fluorophores Using Gold Nanoparticles on DNA Origami Scaffolds, J. Phys. Chem. C 117, 12735-12744, (2013).

129. W. Li*, Y. Yang, H. Yan, Y. Liu*, 3-Input Majority Logic Gate and Multiple Input Logic Circuit Based on DNA Strand Displacement, Nano Letters 13, 2980-2988, (2013).

128. A. Johnson-Buck, J. Nangreave, S. Jiang, H. Yan, N. Walter*, Multifactorial Modulation of Binding and Dissociation Kinetics on Two-Dimensional DNA Nanostructures, Nano Letters 13, 2754-2759, (2013).

127. F. Zhang, Y. Liu*, H. Yan*, Complex Archimedean Tiling Self-assembled from DNA Nanostructures, J. Am. Chem. Soc. 135, 7458-7461, (2013).

126. X. Wei, J. Nangreave, S. Jiang, H. Yan, Y. Liu*, Mapping the Thermal Behavior of DNA Origami Nanostructures, J. Am. Chem. Soc. 135, 6165-6176, (2013).

125. J. Flory, S. Shinde, S. Lin, Y. Liu, H. Yan, G. Ghirlanda, P. Fromme*, PNA-peptide Assembly in a 3D DNA Nanocage at Room Temperature, J. Am. Chem. Soc. 135, 6985-6993, (2013).

124. Y. Yang, Z. Zhao, F. Zhang, J. Nangreave, Y. Liu*, H. Yan*, Self-assembly of DNA Rings from Scaffold Free DNA Tiles, Nano letters 13, 1862-1866, (2013).

123. Z. Deng, S. Pal, A. Samanta, H. Yan, Y. Liu*, DNA Functionalization of Colloidal II-VI Semiconductor Nanowires, Chemical Sciences 3, 2234-2240, (2013).

122. X. Liu, Y. Liu*, H. Yan*, Functionalized DNA Nanostructures for Nanomedicine, Israel Journal of Chemistry, Special Issue on Supramolecular Chemistry for Materials and Medicine, Invited review, 53, 555-566 (2013).

121. O. Schulz, Z. Zhao, A. Ward, M. Koenig, F. Koberling, Y. Liu, J. Enderlein, H. Yan* and R. Ros*, Tip Induced Fluorescence Quenching for Nanometer Optical and Topographical Resolution, Optical Nanoscopy, 2:1, (2013).

120. D. Han*, S. Pal, Y. Yang, S. Jiang, J. Nangreave, Y. Liu*, H. Yan*, DNA Gridiron Nanostructures Based on Four-Arm Junctions, Science, 339, 1412-1415, (2013).

119. A. Johnson-Buck, J. Nangreave, D. Kim, M. Bathe, H. Yan, N. Walter*, Super-Resolution Fingerprinting Detects Chemical Reactions and Idiosyncrasies of Single DNA Pegboards, Nano Letters, 13, 728-733 (2013).

118. Z. Zhao, Y. Liu*, H. Yan*, DNA Origami Templated Self-assembly of Discrete Length Single Wall Carbon Nanotubes, Org. Biomol. Chem., 11, 596-598 (2013).


117. Z. Deng, A. Samanta, J. Nangreave, H. Yan*, Y. Liu*, Robust DNA Functionalized Core/Shell Quantum Dots with Fluorescent Emission Spanning from UV-Vis to Near IR and Compatible with DNA Directed Self-Assembly, J. Am. Chem. Soc., 134, 17424-17427 (2012).

116. Y. Yang, D. Han, J. Nangreave, , Y. Liu*, H. Yan*, DNA Origami with Double-Stranded DNA As a Unified Scaffold, ACS Nano, 6, 8209-8215 (2012).

115. N. Lu, H. Pei, Z. Ge, C. R. Simmons, H. Yan*, C. Fan*, Charge Transport within A Three-Dimensional DNA nanostructure Framework, J. Am. Chem. Soc., 134, 13148-13151 (2012).

114. Q. Jiang, C. Song, J. Nangreave, X. Liu, L. Lin, D. Qiu, Z. Wang, G. Zou, X. Liang, H. Yan*, B. Ding*, DNA Origami as a Carrier for Circumvention of Drug Resistance, J. Am. Chem. Soc., 134, 13396-13403 (2012).

113. X. Liu, Y. Xu, T. Yu, C. Craig, Y. Liu, H. Yan*, Y. Chang*, A DNA Nanostructure Platform for Directed Assembly of Synthetic Vaccines, Nano Letters, 12, 4254-4259 (2012).

112. Z. Deng*, D. Cao, J. He, S. Lin, S. M. Lindsay, Y. Liu*, Solution Synthesis of Ultrathin Single-Crystalline SnS Nanoribbons for Photodetectors via Phase Transition and Surface Processing, ACS Nano, 6, 6197-6207 (2012).

111. A. Samanta, Z. Deng, Y. Liu*, Aqueous Synthesis of Glutathione-Capped CdTe/CdS/ZnS and CdTe/CdSe/ZnS Core/Shell/Shell Nanocrystal Heterostructures, Langmuir, 28, 8205-8215 (2012).

110. J. Fu, M. Liu, Y. Liu*, H. Yan*, Spatially-Interactive Biomolecular Networks Organized by Nucleic Acid Nanostructures, Acc. Chem. Res. 45, 1215-1226 (2012).

109. F. Zhang, J. Nangreave, Y. Liu*, H. Yan*, Reconfigurable DNA Origami to Generate Quasi-Fractal Patterns, Nano Letters, 12, 3290-3295 (2012).

108. A. V. Pinheiro, J. Nangreave, S, Jiang, H. Yan, Y. Liu*, Steric Crowding and the Kinetics of DNA Hybridization within a DNA Nanostructure System, ACS Nano, 6, 5521-5530 (2012).

107. J. Fu, H. Yan*, Controlled Drug Release by a Nanorobot, Nature Biotechnol. 30, 407-408 (2012).

106. J. Fu, M. Liu, Y. Liu, N. W. Woodbury*, H. Yan*, Interenzyme Substrate Diffusion for an Enzyme Cascade Organized on Spatially Addressable DNA Nanostructures, J. Am. Chem. Soc. 134, 5516-5519 (2012).

105. Z. Li, L. Wang, H. Yan, Y. Liu*, Effect of DNA Hairpin Loops on the Twist of Planar DNA Origami Tiles, Langmuir, 28, 1959-1965 (2012).


104. A. V. Pinheiro, D. Han, W. M. Shih*, H. Yan*, Challenges and opportunities for structural DNA nanotechnology, Nature Nanotechnol. 6, 763-772 (2011).

103. S. Pal, Z. Deng, H. Wang, S. Zou, Y. Liu*, H. Yan*, DNA Directed Self-Assembly of Anisotropic Plasmonic Nanostructures, J. Am. Chem. Soc. 133, 17606-17609 (2011).

102. Y. Liu, Nanomaterials: DNA brings quantum dots to order, Nature Nanotechnol. 6, 463-464 (2011).

101. P. Dutta, R. Varghese, J. Nangreave, S. Lin, H. Yan, Y. Liu*, DNA Directed Artificial Light Harvesting Antenna, J. Am. Chem. Soc. 133, 11985-11993 (2011).

100. C. R. Simmons, D. Schmitt, X. Wei, D. Han, A. M. Volosin, D. M Ladd, D. Seo, Y. Liu, H. Yan*, Size-Selective Incorporation of DNA Nanocages into Nanoporous Antimony-doped Tin Oxide Materials, ACS Nano, 5, 6060-6068 (2011).

99. Z. Zhao, Y. Liu, H. Yan*, Organizing DNA Origami Tiles Into Larger Structures Using Pre-formed Scaffold Frames, Nano Letters, 11, 2997-3002 (2011).

98. T. Torring, N. V. Voigt, J. Nangreave, H. Yan*, K. Gothelf*, DNA Origami: A quantum leap for self-assembly of complex structures, Chem. Soc. Rev, 40, 5636-5646 (2011).

97. X. Liu, H. Yan, Y. Liu*, Y. Chang*, Targeted Cell-Cell Interactions by DNA Nanoscaffold-Templated Multivalent Bi-specific Aptamers, Small, 7, 1673-1682 (2011).

96. D. Han*, S. Pal, J. Nangreave, Z. Deng, Y. Liu*, H. Yan*, DNA Origami with Complex Curvatures in Three-dimensional Space, Science, 332, 342-346 (2011).

95. S. Pal, R. Varghese, H. Yan*, Y. Liu*, Site Specific Synthesis and in-situ Immobilization of Fluorescent Silver Nanoclusters on DNA Nanoscaffolds Using Tollens Reaction, Angew Chem Int Ed, 50, 4176-4179 (2011).

94. Z. Deng, L. Tong, S. Lin, M. Flores, J. Cheng, H. Yan, Y. Liu* High Quality Manganese-Doped Zinc Sulfide Quantum Rods with Tunable Dual-Color and Multi-Photon Emissions, J. Am. Chem. Soc, 133, 5389-5396 (2011).

93. J. Nangreave, H. Yan, Y. Liu*, DNA Nanostructures as Models for Evaluating the Role of Enthalpy and Entropy in Polyvalent Binding, J. Am. Chem. Soc, 133, 4490-4497 (2011).

92. Q. Mei, X. Wei, F. Su, Y. Liu, C. Youngbull, R. Johnson, S. Lindsay, H. Yan*, D. Meldrum* Stability of DNA Origami Nanoarrays in Cell Lysate Nano Letters, 11, 1477-1482 (2011).

91. Z. Zhao, Y. Liu*, H. Yan*, Encapsulation of Gold Nanoparticles in a DNA Origami Cage, Angew Chem Int Ed, 50, 2041-2044 (2011).


90. B. Ding, H. Wu, W. Xu, Z. Zhao, Y. Liu, H. Yu*, H. Yan*, Interconnecting Gold Islands with DNA Origami Nanotubes, Nano Lett. 10, 5065-5069 (2010).

89. D. Han, S. Pal, Y. Liu*, H. Yan*, Folding and Cutting DNA into Reconfigurable Topological Nanostructures, Nature Nanotechnol. 5, 712-717 (2010).

88. Z. Deng, H. Yan, Y. Liu*, Controlled Colloidal Growth of  Ultra-Thin Single-Crystal ZnS Nanowires with Magic-Size Diameter, Angew. Chem. Int. Ed. 49, 8695-8698 (2010).

87. Z. Li, M. Liu, L. Wang, J. Nangreave; H. Yan, Y. Liu*, Molecular Behavior of DNA Origami in Higher Order Self-assembly, J. Am. Chem. Soc. 138, 13545-13552 (2010).

86. H. Pei, N. Lu, Y. Wen, S. Song, Y. Liu, H. Yan*, C. Fan*, A DNA Nanostructure-based Biomolecular Probe Carrier Platform for Electrochemical Biosensing, Advanced Materials, 22, 4754-4758 (2010).

85. J. Nangreave, D. Han, Y. Liu, H. Yan*, DNA Origami: A History and Current Perspective, Curr Opin Chem Biol 14, 608-615 (2010).

84. N. Stephanopoulos, M. Liu, G. Tong, Z. Li, Y. Liu, H. Yan*; M. Francis*, Immobilization and One-Dimensional Arrangement of Virus Capsids With Nanoscale Precision Using DNA Origami, Nano Lett. 10, 2714-2720 (2010).

83. Z. Deng*, O. Schulz, S. Lin, B. Ding, X. Liu, X. Wei, R. Ros, H. Yan, Y. Liu*, Aqueous Synthesis of Zinc-Blende CdTe/CdS Magic-Core/Thick-Shell Tetrahedral Shaped Nanocrystals with Emission Tunable to Near-Infrared, J. Am. Chem. Soc. 132, 5592-5593 (2010).

82. K. Lund, A. J. Manzo, N. Dabby, N. Michelotti, A. Johnson-Buck, J. Nangreave, S. Taylor, R. Pei, M. N. Stojanovic*, N. G. Walter*, E. Winfree*, H. Yan*, Molecular Robots Guided by Prescriptive Landscapes, Nature 465, 206-210 (2010).

81. S. Pal, Z. Deng, B. Ding, H. Yan*, Y. Liu*, DNA Origami Directed Self-assembly of Discrete Silver Nanoparticle Architectures, Angew. Chem. Int. Ed. 49, 2700-2704 (2010).

80. B. Ding*, Z. Deng, H. Yan, S. Cabrini, R. Zuckermann, J. Bokor*, Gold Nanoparticles Self-similar Chain Structure Organized by DNA Origami, J. Am. Chem. Soc. 132, 3248-3249 (2010).

79. R. Chhabra, J. Sharma, Y. Liu, S. Rinker, H. Yan*, DNA Self-assembly for Nanomedicine, Advanced Drug Delivery Reviews 62, 617-625 (2010).

78. Z. Zhao, H. Yan*, Y. Liu*, A Route to Scale up DNA Origami using DNA Tiles as Folding Staples, Angew. Chem. Int. Ed. 49, 1414-1417 (2010).

77. Q. Wang*, H. Wang, C. Lin, J. Sharma, S. Zou*; Y. Liu*, Photonic Interactions between Quantum Dots and Gold Nanoparticles in Discrete Nanostructures through DNA Directed Self-Assembly. Chem. Commun. 46, 240-242 (2010).


76. Z. Deng*, H. Yan, Y. Liu*, Band Gap Engineering of Quaternary Alloyed ZnCdSSe Quantum Dots via a Facile Phosphine-Free Colloidal Method, J. Am. Chem. Soc. 131, 17744-17745 (2009).

75. R. Chhabra, J. Sharma, H. Wang, S. Zou, S. Lin, H. Yan, S. Lindsay*, Y. Liu*, Distance-dependent interactions between gold nanoparticles and fluorescent molecules with DNA as tubable spacers, Nanotechnology 20, 485201 (2009).

74. Y. Ke, S. M. Douglas, M. Liu, J. Sharma, A. Cheng, A. Leung, Y. Liu, W. M. Shih*, H. Yan*, Multilayer DNA Origmai Packed on a Square Lattice, J. Am. Chem. Soc. 131, 15903-15908 (2009).

73. L. A. Stearns, R. Chhabra, J. Sharma, Y. Liu, W. T. Petuskey, H. Yan*, J. C. Chaput*, Template-Directed Nucleation and Growth of Inorganic Nanoparticles on DNA Scaffolds, Angew. Chem. Int. Ed. 45, 8494-8496 (2009).

72. S. Pal, H. Yan, Y. Liu*, Stable Silver Nanoparticle-DNA Conjugates for Directed Self-assembly of Core-Satellite Silver-Gold Nanoclusters, Chem. Commun. 6059-6061 (2009).

71. Z. Li, B. Wei, J. Nangreave, C. Lin, Y. Liu, Y. Mi*, H. Yan*, A Replicable Tetrahedral Nanostructure Self-Assembled from a Single DNA Strand, J. Am. Chem. Soc. 131, 13093-13098 (2009).

70. Y. Liu, H. Yan*, Designer Curvature, Science 325, 685-686 (2009).

69. Y. Liu, H. Yan*, Coordinating Corners, Nature Chemistry 1, 339-340 (2009).

68. C. S. Andersen, M. M. Knudsen, R. Chhabra, Y. Liu, H. Yan*, K. V. Gothelf*, Distance Dependent Interhelical Couplings of Organic Rods Incorporated in DNA 4-Helix Bundles, Bioconjugate Chem. 20, 1538-1546 (2009).

67. J. Nangreave, H. Yan*, Y. Liu*, Studies of Thermal Stability of Multivalent DNA Hybridization in a Nanostructured System, Biophys. J. 97, 563-571 (2009).

66. A. E. Gerdon, S.-S. Oh, W. Hsieh, Y. Ke, H. Yan*, H. T. Soh*, Controlled Delivery of DNA Origami on Patterned Surface, Small 5, 1942-1946 (2009).

65. Y. Ke, J. Sharma, M. Liu, K. Jahn, Y. Liu*, H. Yan*, Scaffolded DNA Origami of a DNA Tetrahedron Molecular Container, Nano. Lett. 9, 2445-2447 (2009).

64. C. Lin, H. Yan*, DNA Nanotechnology: A Cascade of Activity, Nature Nanotechnol. 4, 211-212 (2009). Invited News & Views article.

63. C. Lin, Y. Liu, H. Yan*, Designer DNA Nanoarchitectures, Biochemistry, 48, 1663-1674 (2009).

62. J. Sharma, R. Chhabra, A. Cheng, J. Brownell, Y. Liu*, H. Yan*, Control of Self-Assembly of DNA Tubules Through Integration of Gold Nanoparticles, Science, 323, 112-116 (2009).

61. C. Lin, Y. Ke, Z. Liu, J. Wang, Y. Liu*, H. Yan*, Designer Nanoarchitectures Self-assembled from Mirror Image DNA, Nano Lett. 9, 433-436 (2009).


60. C. Lin, S. Rinker, X. Wang, Y. Liu, N. C. Seeman*, H. Yan*, In-vivo Cloning of DNA Nanostructures, Proc. Natl. Acad. Sci. U.S.A. 105, 17626-17635 (2008).

59. Z. Li, Y. Ke, C. Lin, H. Yan*, Y. Liu*, Subtractive Assembly of DNA Nanoarchitectures Driven by Fuel Strand Displacement, Chem. Commun. 4318-4320 (2008).

58. C. Lin, J. Nangreave, Z. Li, H. Yan*, Y. Liu*, Signal Amplification on a DNA Tile based Biosensor with Enhanced Sensitivity, Nanomedicine 3, 521-528 (2008).

57. Y. Xu, Q. Wang, P. He, Q. Dong, F. Liu, Y. Liu, L. Lin, H. Yan*, X. Zhao*, Cell Nucleus Penetration by Quantum Dots Induced by Nuclear Staining Organic Fluorophore and UV-Irradiation, Advanced Materials 20, 3468-3473 (2008).

56. J. Sharma, R. Chhabra, C. S. Anderson, K. V. Gothelf, H. Yan*, Y. Liu*, Toward Reliable Gold Nanoparticle Patterning on Self-assembled DNA Nanoscaffold, J. Am. Chem. Soc. 130, 7820-2821 (2008).

55. C. S. Anderson, H. Yan, K. V. Gothelf*, Bridging One Helical Turn in dsDNA by Templated Dimerization of Molecular Rods, Angew. Chem. Int. Ed. 47, 5569-5572 (2008).

54. J. Sharma, Y. Ke, C. Lin, R. Chhabra, Q. Wang, J. Nangreave, Y. Liu*, H. Yan*, DNA Tile Directed Self-assembly of Quantum Dots into Two-dimensional Nanopatterns, Angew. Chem. Int. Ed. 47, 5157-5159 (2008).

53. S. Rinker, Y. Ke, Y. Liu*, H. Yan*, Self-assembled DNA Nanostructures for distance dependent multivalent ligand-protein binding, Nature Nanotechnol. 3, 418-422 (2008).

52. Y. Ke, S. Lindsay, Y. Chang, Y. Liu, H. Yan*, Self-assembled Water-soluble Nucleic Acid Probe Tiles for Label Free RNA Detection, Science 319, 180-183 (2008).

51. J. sharma, R. Chhabra, H. Yan, Y. Liu*, A Facile In situ Generation of Dithiocarbamate Ligands for Stable Gold Nanoparticle-Oligonucleotide Conjugates Chem. Commun. 18, 2140-2142 (2008).

50. Q. Wang, Y. Liu, Y. Ke, H. Yan*, Quantum Dots Bioconjugation During Core-Shell Synthesis, Angew. Chem. Int. Ed. 47, 316-319 (2008).


49. C. Lin, X. Wang, Y. Liu, N. C. Seeman, H. Yan*, Rolling Circle Enzymatic Replication of a Complex Multi-crossover DNA Nanostructure, J. Am. Chem. Soc. 129, 14475-14481 (2007).

48. R. Chhabra, J. Sharma, Y. Ke, Y. Liu, S. Rinker, S. Lindsay, H. Yan*, Spatially Addressable Multi-protein Nanoarrays Templated by Aptamer Tagged DNA Nanoarchitectures, J. Am. Chem. Soc. 129, 10304-10305 (2007).

47. Q. Wang, Y. Liu, C. Lin, H. Yan*, Lay-by-layer Growth of Superparamagnetic and fluorecently barcoded Nanospheres, Nanotechnology 18, 40, 405026 (2007).

46. C. Lin, Y. Ke, Y. Liu, M. Mertig, J. Gu, H. Yan*, Functional DNA Nanotube Arrays: Bottom-up Meets Top-down, Angew. Chem. Int. Ed. 46, 6089-6092 (2007).

45. Q. Wang, Y. Liu, H. Yan*, Mechanism of a Self-templating Synthesis of Monodispersed Hollow Silica Nanospheres with Tunable Size and Shell Thickness, Chem. Commun. 2339-2341 (2007)

44. Q. Wang, Y. Xu, X. Zhao, Y. Chang, Y. Liu, L. Jiang, J. Sharma, D.-K. Seo*, H. Yan*, A Facile One-step In situ Functionalization of Quantum Dots with Preserved Photoluminescence for Bioconjugation, J. Am. Chem. Soc.129, 6380-6381, (2007).

43. B. Williams, K. Lund, Y. Liu, H. Yan*, J. Chaput*, Self-assembled Peptide Nanoarrays: An Approach to Studying Protein-protein Interactions, Angew. Chem. Int. Ed. 46, 3051-3054 (2007).

42. C. Lin, Y. Liu, H. Yan*, Self-assembled Combinatorial Encoding Nanoarrays for Multiplexed Biosensing, Nano Lett. 7, 507-512 (2007).

41. J. Sharma, R. Chhabra, H. Yan, Y. Liu*, pH-driven Conformational Switch of i-motif DNA for Reversible Assembly of Gold Nanoparticles. Chem. Commun. 477-479 (2007).


40. C. Lin, M. Xie, J. Chen, Y. Liu, H. Yan*, Rolling Circle Amplification of a DNA Nano- junction. Angew. Chem. Int. Ed. 45, 7537-7539 (2006).

39. C. Lin, E. Katilius*, Y. Liu, J. Zhang, H. Yan*, Self-assembled Signaling Aptamer Nanoarrays for Protein Detection, Angew. Chem. Int. Ed. 45, 5296-5301 (2006).

38. C. Lin, Y. Liu, S. Rinker, H. Yan*, DNA Tile Based Self-assembly: Building Complex Nano-architectures, ChemPhysChem 7, 1641-1647 (2006).

37. K. Lund, Y. Liu, H. Yan*,Combinatorial Self-Assembly of DNA Nanostructures, Organic and Biomolecular Chemistry 4, 3402-3403 (2006)

36. S. Rinker, Y. Liu, H. Yan*, Two Dimensional LNA/DNA arrays: Estimating the Helicity of LNA/DNA Hybrid Duplex, Chem. Commun. 2675-2677 (2006).

35. R. Chhabra, J. Sharma, Y. Liu, H. Yan*, Addressable Molecular Tweezers for DNA Templated Coupling Reactions, Nano Lett. 6, 978-983 (2006).

34. L. Lin, H. Wang, Y. Liu, H. Yan, and S. Lindsay*, Recognition Imaging with a DNA Aptamer, Biophysical J. 90, 4236-4238 (2006).

33. K. Lund, B. Williams, Y. Ke, Y. Liu, H. Yan*, DNA Nanotechnology: a rapidly evolving field, Current Nanoscience 2, 113-122 (2006).

32. Y. Ke, Y. Liu, J. Zhang, H. Yan*, A Study of DNA Tube Formation Mechanisms Using 4-, 8- and 12-Helix DNA Nanostructures, J. Am. Chem. Soc.128, 4414-4421 (2006).

31. J. Zhang, Y, Liu, Y. Ke, H. Yan*, Periodic Square-like Gold Nanoparticle Arrays Templated by a DNA Nanogrids on a Surface, Nano Lett.6, 248-251 (2006).

30. H. Yan*, B. Xu, Towards Rapid DNA Sequencing: Detecting Single-Stranded DNA with a Solid-State Nanopore, Small 2, 310-312 (2006).

29. J. Sharma, R. Chhabra, Y. Liu, Y. Ke, H. Yan*, DNA Templated Self-assembly of Two-Dimensional and Periodical Gold Nanoparticle Arrays, Angew. Chem. Int. Ed. 45, 730-735 (2006).


28. K. Lund, Y. Liu, S. Lindsay, H. Yan*, Self-assembling Molecular Pegboard, J. Am. Chem. Soc. 127, 17606-17607 (2005).

27. Y. Liu, Y. Ke, H. Yan*, Self-assembly of Symmetric Finite Size DNA Nanoarrays, J. Am. Chem. Soc. 127, 17140-17141 (2005).

26. Y. Liu, C. Lin, H. Li, H. Yan*, Aptamer Directed Self-assembly of Proteins on a DNA Nanostructure, Angew. Chem. Int. Ed. 44, 4333 (2005).

25. S. H. Park, P. Yin, Y. Liu, J. Reif, T. H. LaBean, H. Yan*, Programmable DNA Self-assemblies for Nanoscale Organization of Ligands and Proteins. Nano Lett. 5, 729 (2005).

24. S. H. Park, R. Barish, H. Li , J. H. Reif , G. Finkelstein, H. Yan*, and T. H. LaBean*, Three Helix Bundle DNA Tiles Self-assemble into 2D Lattice or 1D Templates for Silver Nanowires. Nano Lett. 5, 693 (2005).

23. Y. Liu, H. Yan*, Modular Self-assembly of DNA Lattice with Tunable Periodicity, Small 1, 327-330 (2005).

22. J. H. Reif*, T. H. LaBean, S. Sahu, H. Yan and P. Yin, Design, Simulation, and Experimental Demonstration of Self-assembled DNA Nanostructures and Motors. In: UPP2004, LNCS 3566, ed. by J.P. Banatre, Springer-Verlag Berlin Heidelberg, pp. 173-187, (2005).

21. N. C. Seeman*, B. Ding , S. Liao , T. Wang, W.B. Sherman, P.E. Constantinou, J. Kopatsch, C. Mao, R. Sha, F. Liu, H. Yan & P.S. Lukeman, Experiments in Structural DNA Nanotechnology:  Arrays and Devices , Proc. SPIE; Nanofabrication:  Technologies, Devices and Applications 5592, 71-81 (2005).

20. Sha, R., Zhang, X., Liao, S., Constantinou, P.E., Ding, B., Wang, T., Garibotti, A.V., Zhong, H., Israel, L.B., Wang, X., Wu, G., Chakraborty, B., Chen, J., Zhang, Y., Mao, C., Yan, H., Kopatsch, J., Zheng, J., Lukeman, P.S., Sherman, W.B. and Seeman, N.C.*, Motifs and Methods in Structural DNA Nanotechnology, Proc. Intl. Conf. Nanomaterials, NANO 2005, July 13-15, 2005, Mepco Schlenk Engineering College, Srivakasi, India, V. Rajendran, ed., pp. 3-10 (2005).

19. R. Sha, X. Zhang, S. Liao, P. Constantinou, B. Ding, T. Wang, A. V. Garibotti, H. Zhong, L. B. Israel, X. Wang, G. Wu, B. Chakraborty, J. Chen, Y. Zhang, H. Yan, Z Shen, W. SHen, P.Sa-Ardyen, J. Kopatsch, J. Zheng, P. Lukeman, W.B. Sherman, C. Mao, N. Jonoska, N. C. Seeman*. Structural DNA Nanotechnology: Molecular Construction and Composition. In: UC2005, LNCS 3699, ed. by C.S. Calude et al. Springer-Verlag Berlin Heidelberg, pp. 20-31 (2005).


18. H. Yan*, Nucleic Acid Technology, Science, 306, 2048-2049 (2004).

17. S. H. Park, H. Yan, J.H. Reif, T. H. LaBean, G. Finkelstein*, Electronic Nanostructures Templated on Self-assembled DNA Scaffolds, Nanotechnology 15, S525-S527 (2004).

16. H. Yan*, P. Yin, S. H. Park, H. Li, L. Feng, X. Guan, D. Liu, J. H. Reif, T. H. LaBean, Self-Assembled DNA Structures for Nanoconstruction. AIP Proceedings 725 (DNA-Based Molecular Electronics), 43-52. (2004).

15. P. Yin, H. Yan*, X.J. Guan, A.J. Turberfield*, J. H. Reif*, An Autonomous Unidirectional DNA Walker. Angew. Chem. Int. Ed. 43, 4906-4911 (2004).

14. H. Li, S. H. Park, J. H. Reif, T. H. LaBean, H. Yan* DNA Templated Self-Assembly Of Protein And Nanoparticle Linear Arrays. J. Am. Chem. Soc. 126, 418 (2004).

13. Z. Shen, H. Yan, T. Wang, N. C. Seeman* Paranemic Crossover DNA: A Generalized Holliday Structure with Applications in Nanotechnology. J. Am. Chem. Soc. 126, 1666 (2004).


12. H. Yan*, L. Feng, T. H. LaBean, J. H. Reif* Parallel Molecular Computation of Pair-wise Exclusive-Or (XOR) Using DNA String Tile Self-Assembly. J. Am. Chem. Soc. 125, 14246 (2003).

11. H. Yan*, S. H. Park, G. Finkelstein, J. H. Reif & T. H. LaBean*, DNA Templated Self-assembly of Protein Arrays and Highly Conductive Nanowires. Science, 301, 1882 (2003).

10. L. Feng, S. H. Park, J. H. Reif, H. Yan*, A Two-State DNA Lattice Switched By DNA Nanoactuator. Angew. Chem. Int. Ed. 42, 4342 (2003).

9. H. Yan, T. H. LaBean, L. Feng, J. H. Reif*. Directed Nucleation Assembly of DNA tile Complexes for Barcode Patterned Lattices. Proc. Natl. Acad. Sci. U.S.A. 100, 8103 (2003).

8. H. Yan, N. C. Seeman*. Edge-Sharing DNA Triangles And One-Dimensional Self-Assembly. J. Supramol. Chem., 1, 229-237 (2003).

2002 and Before

7. X. Zhang, H. Yan, Z. Shen and N. C. Seeman*. Paranemic Cohesion of Topologically-Closed DNA Molecules. J. Am. Chem. Soc. 124, 12940-12941 (2002).

6. H. Yan, X. Yang, Z. Shen and N. C. Seeman*. A Robust Sequence-dependent Rotary DNA Device, Nature, 415, 62-65 (2002).

5. T. H. LaBean, H. Yan, J. Kopatsch, F. Liu, E. Winfree, J. H. Reif and N. C. Seeman*. The Construction, Analysis, Ligation and Aelf-assembly of DNA Triple Crossover Molecules, J. Am. Chem. Soc. 122, 1848-1860 (2000).

4. N. C. Seeman, H. Wang, X. Yang, F. Liu, C. Mao, W. Sun, L. Wenzler, Z. Shen, R. Sha, H. Yan, M.H. Wong, P. Sa-Ardyen, B. Liu, H. Qiu, X. Li, J. Qi, S.M. Du, Y. Zhang, J.E. Mueller, T.-J. Fu, Y. Wang, and J. Chen. New Motifs in DNA Nanotechnology, Nanotechnology 9, 257-273 (1998).

3. Y. Ma, Q. Wang*, H. Yan, X. Ji and Q. Qiu. Zeolite-Catalyzed Esterification. 1. Synthesis Of Acetates, Benzoates And Phthalates. Appl. Catal. 139, 51-57 (1996).

2. Q. Wang*, Y. Ma, X. Ji, H. Yan, Q. Qiu. Zeolite-Catalyzed Friedel-Crafts Acylation Of Aromatics. 1. Synthesis Of 4-Acyl Anisole With A HY Catalyst. Chin. Chem. Lett. 7, 99-102 (1996).

1. Q. Wang*, Y. Ma, X. Ji, H. Yan and Q. Qiu. Regioselective Acylation Of Anisole With Carboxylic-Acid Over HZSM-5 Catalyst. J. Chem. Soc. Chem. Comm. 22, 2307-2308 (1995).