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Software tools

As part of our research efforts, we develop tools for computer simulation, analysis and visualization. Most of the tools that we develop can be found on our github account.


We collaborate on model and tool development as part of the oxDNA simulation package. The package is hosted on sourceforge repository, and documentation is provided on


A new tool for interactive visualization, editing and analysis of DNA and RNA nanostructures. Very fast, user-friendly and platform independent. Runs in any web-browser with JavaScript support. Check it out!

oxDNA/oxRNA simulation analysis

A new set of Python tools for automated analysis of large nanostructure simulations. The scripts with documentation and examples are provided here.

A new server for simulation analysis and simulations of nucleic acid nanostructures. It is equipped with 8 NVIDIA RTX 2080Ti GPUs and free to use.